View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_3 (Length: 425)
Name: NF11412_low_3
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_3 |
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| [»] scaffold0110 (5 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 29989 - 30377
Alignment:
| Q |
20 |
caatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29989 |
caatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattca |
30088 |
T |
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| Q |
120 |
ggaactgagccttatactgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30089 |
ggaactgagccttatactgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgat |
30188 |
T |
|
| Q |
220 |
tcgtttttagattaagtatgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
30189 |
tcgtttttagattaagtatgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaac |
30288 |
T |
|
| Q |
320 |
aaagtcacatggtgcaactgtgatttcatcaaacttgatgtgattcttattatgcactaagtggtttatttaatttgttcttctgatgt |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30289 |
aaagtcacatggtgcaactgtgatttcgtcaaacttgatgtgattcttattatgcactaagtggtttattcaatttgttcttctgatgt |
30377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 13132 - 13397
Alignment:
| Q |
20 |
caatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattca |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
13132 |
caatgaaccaagagttattgctgcacttggttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattca |
13231 |
T |
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| Q |
120 |
ggaactgagccttatactgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13232 |
ggaactgagccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgat |
13331 |
T |
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| Q |
220 |
tcgtttttagattaagtatgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagt |
285 |
Q |
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|| |||||||||||||| ||||||| ||||| | |||||||| ||| ||| |||||| |||||| |
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| T |
13332 |
tcatttttagattaagtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagt |
13397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 20869 - 21134
Alignment:
| Q |
20 |
caatgaaccaagagttgttgctgcacttggttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattca |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
20869 |
caatgaaccaagagttattgctgcacttggttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattca |
20968 |
T |
|
| Q |
120 |
ggaactgagccttatactgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20969 |
ggaactgagccttatattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgat |
21068 |
T |
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| Q |
220 |
tcgtttttagattaagtatgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagt |
285 |
Q |
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|| |||||||||||||| ||||||| ||||| | |||||||| ||| ||| |||||| |||||| |
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| T |
21069 |
tcatttttagattaagtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagt |
21134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 13398 - 13523
Alignment:
| Q |
255 |
tgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaact |
354 |
Q |
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||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
13398 |
tgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
13497 |
T |
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| Q |
355 |
tgatgtgattcttattatgcactaag |
380 |
Q |
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||| ||||| | || |||||||||| |
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| T |
13498 |
cgatttgattttcatcatgcactaag |
13523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 21135 - 21260
Alignment:
| Q |
255 |
tgagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaact |
354 |
Q |
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||||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
21135 |
tgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
21234 |
T |
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| Q |
355 |
tgatgtgattcttattatgcactaag |
380 |
Q |
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||| ||||| | || |||||||||| |
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| T |
21235 |
cgatttgattttcatcatgcactaag |
21260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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