View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_5 (Length: 353)
Name: NF11412_low_5
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 35902674 - 35902358
Alignment:
| Q |
18 |
agaaccataacattgtcatcacatatttccttcccttctcttgatcttccaacaaagctttctataatcgaatgccacagggatgaggtatacatacata |
117 |
Q |
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| T |
35902674 |
agaaccataacattgtcatcacatatttccttcccttctcttgatcttccaacaaagctttccataatcgaatgccacagggatgaggtatacatacata |
35902575 |
T |
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| Q |
118 |
aaaagttaccatagcctcaaatattttttatcataatatataatagtaattgatgggttatacttgtgctattttatcaaattagattcaagagttacct |
217 |
Q |
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| T |
35902574 |
aaaagttactatagcctcaaatattttttatcataatatataatagtaattgatgg-ttatacttgtgctattttatcaaattagattcaagagttacct |
35902476 |
T |
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| Q |
218 |
gcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatccagagtactcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902475 |
gcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatccagagtactcta |
35902376 |
T |
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| Q |
318 |
aagatattcttttgtttc |
335 |
Q |
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| T |
35902375 |
aagatattcttttgtttc |
35902358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 37024448 - 37024571
Alignment:
| Q |
208 |
agagttacctgcaaaggcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaaggtcatcca |
307 |
Q |
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| T |
37024448 |
agagctacctgccaaggctgaagtgattgctaaatcagataagactggaattgagatgtttagatatggagatcacattatgggaattcaaggtcatcct |
37024547 |
T |
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| Q |
308 |
gagtactctaaagatattcttttg |
331 |
Q |
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| T |
37024548 |
gagtactctaaagacatccttttg |
37024571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 37024253 - 37024309
Alignment:
| Q |
52 |
cttctcttgatcttccaacaaagctttctataatcgaatgccacagggatgaggtat |
108 |
Q |
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| T |
37024253 |
cttctcttgaacttccaacgaagctttccattattcaatgccatagggatgaggtat |
37024309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 2052055 - 2051979
Alignment:
| Q |
224 |
gcagaggtaattgctaggtcagataaaactggaattgagatgtttaaatatggagatcatattatgggaatccaagg |
300 |
Q |
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||||||||||||| | ||||||| || ||||||||||||||||||| |||||| |||| || |||| |||||||| |
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| T |
2052055 |
gcagaggtaattggttggtcagaaaagactggaattgagatgtttaggtatggaaatcacatgttgggcatccaagg |
2051979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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