View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_7 (Length: 328)
Name: NF11412_low_7
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_7 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 267575 - 267256
Alignment:
| Q |
1 |
tcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacag |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
267575 |
tcataatagttcaggtatgacagttagcttggagcagggaaggaattctactattcccacggatgtagcagcaggtgcgggcagttccagcactagacag |
267476 |
T |
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| Q |
101 |
tctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccgatcaattcaacaagacgggcattggtatatgcatccgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
267475 |
tctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcaaccttctgagatcaattcaacaagacgggcattggtatatgcatccgag |
267376 |
T |
|
| Q |
201 |
atgaggagggtacttttattttggctcaatcaatccctatttccccaa-------agtggtaatgggagaagtgttggctttgtataaagcaatagaatg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
267375 |
atgaggagggtacttttattttggctcaatcaatccctatttccccaaagtgtccagtggtaatgggagaagctttggctttgtataaagcaatagaatg |
267276 |
T |
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| Q |
294 |
gttaagtgacatggcctttg |
313 |
Q |
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||||||||||||||| |||| |
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| T |
267275 |
gttaagtgacatggcgtttg |
267256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 14132317 - 14132000
Alignment:
| Q |
1 |
tcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacag |
100 |
Q |
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|||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
14132317 |
tcataacagtccagatatgacagttagcttg-agcacggaaggaattcttctattctcacggatgtagcagcaggtgcgggcagttccagcactgc-cag |
14132220 |
T |
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| Q |
101 |
tctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccgatcaattcaacaagacgggcattggtatatgcatccgag |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14132219 |
tctcgctggcatccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccaatcaattcaacaagacgggcattggtatatgcatccgag |
14132120 |
T |
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| Q |
201 |
atgaggagggtacttttattttggctcaatcaatccctatttccccaa-------agtggtaatgggagaagtgttggctttgtataaagcaatagaatg |
293 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14132119 |
atgaggagggcacatttattttggctcaatcaatccctatttccccaaggtgtccagtggtaatgggagaagcattggctttgtataaagcaatagaatg |
14132020 |
T |
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| Q |
294 |
gttaagtgacatggcctttg |
313 |
Q |
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|||||||||||||||||||| |
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| T |
14132019 |
gttaagtgacatggcctttg |
14132000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12256 - 12149
Alignment:
| Q |
1 |
tcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
12256 |
tcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacggatgtagcagcaggtgtgggcagttccagcactggacag |
12157 |
T |
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| Q |
101 |
tctcgctg |
108 |
Q |
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|||||||| |
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| T |
12156 |
tctcgctg |
12149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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