View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_8 (Length: 307)
Name: NF11412_low_8
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 51413921 - 51413633
Alignment:
| Q |
13 |
tcaataataaggtacctacaattacatgaactaacattaacattaacattaacataacatatacatagtacagagattcaaagagagagcctcagaaaca |
112 |
Q |
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| T |
51413921 |
tcaataataaggtacctacaattacatgaactaacattaacattaacat------aacatatacatagtacagagattcaaagagagagcctcagaagca |
51413828 |
T |
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| Q |
113 |
gatttgtcactggagtttgaatatgattcacctgccacatccacatgattactagctgggtcaaatacacaggacacgtcagcattaatagtgatgttga |
212 |
Q |
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| T |
51413827 |
gatttgtcactggagtttgaatatgattcacctgccacatccacatgattactagctgggtcaaacacacaggacacgtcagcattaatagtgatgttga |
51413728 |
T |
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| Q |
213 |
tgttgatgttgatgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtcaacatgaaactc |
307 |
Q |
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| T |
51413727 |
tgttgatgttgatgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtcaacatgaaactc |
51413633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 51418763 - 51418698
Alignment:
| Q |
224 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgc |
289 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || ||||| |
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| T |
51418763 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgc |
51418698 |
T |
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