View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_high_1 (Length: 621)
Name: NF11413_high_1
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 4359776 - 4359321
Alignment:
| Q |
1 |
attattttcaaactatatttattttgattattacattacacgatttgaaaaaaggagtattataaaatgtacaaaatataggtgcannnnnnnatcgact |
100 |
Q |
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| T |
4359776 |
attattttcaaactatatttattttgattattacattacacgatttgaaaaaaggagtattataaaatgtacaaaatataggtgcatttttttatcgact |
4359677 |
T |
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| Q |
101 |
tttcctaagatttttaactaaaaatacatcttcaatagttacaaaaaattgagtaatttagtttagaaccataggaaaaa---tt--taaggaatacatg |
195 |
Q |
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| T |
4359676 |
tttcctaagatttttaactaaaaatacatcttcaatagttacaaaaaattgagtaatttagtttaaaaccatagaaaaaacacttaaaaaggaatgcatg |
4359577 |
T |
|
| Q |
196 |
cacctaattt--------------tacgtccatgattttttaaagtcacgtgacattttcatttagactacacaatctcacgtgagattcaactacaacc |
281 |
Q |
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| T |
4359576 |
cacctaattttttttttcttacaatacgtccatgattttttatagtcacgtgacattttcatttaaactacacaatctcacgtgagattcaactacaacc |
4359477 |
T |
|
| Q |
282 |
tcttaactcttaaggcaacacaaacccacccacccaagcactaaataataaaaccacgtttttctttctccc--ctttccc--------atatatatata |
371 |
Q |
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| T |
4359476 |
tcttaactcttaaggcaacacaaacccacccacccaagcactaaataataaaaccacgtttttctttctcccctctttcccatatatatatatatatata |
4359377 |
T |
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| Q |
372 |
gacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctct |
427 |
Q |
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| T |
4359376 |
gacccattacccttcctcctcaattcaaccctttctttgtgtttcaatatctctct |
4359321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 528 - 621
Target Start/End: Original strand, 4349627 - 4349720
Alignment:
| Q |
528 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
621 |
Q |
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| T |
4349627 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
4349720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 528 - 621
Target Start/End: Original strand, 4353014 - 4353107
Alignment:
| Q |
528 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
621 |
Q |
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| T |
4353014 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaatgatggacc |
4353107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 528 - 621
Target Start/End: Complemental strand, 4359257 - 4359164
Alignment:
| Q |
528 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
621 |
Q |
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| T |
4359257 |
gtaccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacc |
4359164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 4352866 - 4352931
Alignment:
| Q |
363 |
atatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctctc |
428 |
Q |
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| T |
4352866 |
atatatatacacccatttcccttcctcttcaattcatccctttctttgtgtttcaatatctctctc |
4352931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 4349463 - 4349507
Alignment:
| Q |
361 |
atatatatatagacccattacccttcctcctcaattcatcccttt |
405 |
Q |
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| T |
4349463 |
atatatatatatacccatcacccttcctcttcaattcatcccttt |
4349507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 618
Target Start/End: Complemental strand, 43486230 - 43486155
Alignment:
| Q |
543 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
618 |
Q |
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| T |
43486230 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgg |
43486155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 618
Target Start/End: Complemental strand, 43475611 - 43475536
Alignment:
| Q |
543 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
618 |
Q |
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| T |
43475611 |
aagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaactaatgatgg |
43475536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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