View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_high_3 (Length: 572)
Name: NF11413_high_3
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 36932272 - 36932733
Alignment:
| Q |
1 |
gagaagtcagggaataatctttctccccagatgaaagccaaattggaaggtgaaataaaaaatctcctgaccaagatgaataggggtaaagtatgaacat |
100 |
Q |
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| T |
36932272 |
gagaagtcagggaataatctttctccccagatgaaagccaaattggaaggtgaaataaaaaatctcctgaccaagatgaataggggtaaagtatgaacat |
36932371 |
T |
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| Q |
101 |
tagtatgggaagttttcctatttaaattaagtatcattgtattgagatttataagtagtttaaattatccgttaaacnnnnnnnggtagattagattaga |
200 |
Q |
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| T |
36932372 |
tagtatgggaagttttcctatttaaattaagtatcattgtattgagatttataagtagtttaaattatccgttaaacaaaaaaaggtagattagattaga |
36932471 |
T |
|
| Q |
201 |
ctagttttggcttctgttctagttctttttcggttgttggtctgttgttgtacctttgtactttcctgctgattctttgactttgcacaaaatggcgcaa |
300 |
Q |
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| T |
36932472 |
ctagttttggcttctgttctagttcttcttcggttgttggtctgttgttgtacctttgtactttcctgctgattctttgactttgcacaaaatggcgcaa |
36932571 |
T |
|
| Q |
301 |
ggatatcaattcatggttgtcattggactatatcatccagataaatatttatcaagcttttctttcatatttatgctgttggtgttatgttgtgagggga |
400 |
Q |
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| T |
36932572 |
ggatatcaatttatggttgtcattggactatatcatccagataaatatttatcaagcttttctttcatatttatgctgttggtgttatgttgtgagggga |
36932671 |
T |
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| Q |
401 |
tcaaaactctcaatctctatcacttcactccttaactctcggcccatccactattatgctaa |
462 |
Q |
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| T |
36932672 |
tcaaaactctcaatctctatcacttcactccttaactctcggcccatccactattatgctaa |
36932733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 459 - 572
Target Start/End: Original strand, 36933388 - 36933501
Alignment:
| Q |
459 |
ctaagtacaattgatgtctaataactggaggatcttcttccatccagcaggcctctaactcatgatgggtctgatgggccagcagatcagcaaccttatt |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36933388 |
ctaagtacaattgatgtctaataactggaggatcttcttccatccagcaggcctctaactcatgatgggtctgatgggccagcagatcagcaaccttatt |
36933487 |
T |
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| Q |
559 |
cctgagaatttctt |
572 |
Q |
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| T |
36933488 |
cctgagaatttctt |
36933501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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