View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_high_8 (Length: 411)
Name: NF11413_high_8
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 29269732 - 29269413
Alignment:
| Q |
20 |
caagtaacatactgagataaacgatacaactcaatagtaaatagtgtcaatagtacgatgaacaatgtcgcatatatgatgaacaatgtcacacaataca |
119 |
Q |
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| T |
29269732 |
caagtaacatactgagataaacgatacaactcaatagtaaatagtgtcaatagtacgatgaacattgtcgcatatatgatgaacaatgtcacacaataca |
29269633 |
T |
|
| Q |
120 |
atgaacattatcaagtgacaataattcaaacaatcaaaggcatcaattgaacaaataagtgggtgctaaaaagtcctaagaggttgtaaccaagaaaaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
29269632 |
atgaacattatcaagtgacaataattcaaacaatcaaaggcatcaattgaacaaataagtgggggctaaaaagtcctaagtggttgtaaccaagaaaaca |
29269533 |
T |
|
| Q |
220 |
taaagaccc----------cgtgatatcacgtataaaaatgaattaacatacatattcatatatttcaataatgtgaatacaagaattannnnnnnaaat |
309 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
29269532 |
taaagacccggtgatagcttgtgatatcacgtataaaaatgaattaacatacatattaatatatttcaataatgtgaatacaagaattatttttttaaat |
29269433 |
T |
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| Q |
310 |
atagaaaattctagacctgt |
329 |
Q |
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|||||||||||||||||||| |
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| T |
29269432 |
atagaaaattctagacctgt |
29269413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 29269256 - 29269200
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtc |
397 |
Q |
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|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
29269256 |
gtcaaatagtctagtagttagaacttacacattctaaatatgaagaagtgaagtgtc |
29269200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 31187488 - 31187544
Alignment:
| Q |
342 |
tcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtct |
398 |
Q |
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| T |
31187488 |
tcaaatagtttagtggttagagctcacacattttaaatgtggataagtggagtgtct |
31187544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 3039156 - 3039206
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtga |
391 |
Q |
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||||| ||||||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
3039156 |
gtcaagtagtttagtggttgaagctcacacattttaaatatgaagaagtga |
3039206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 624603 - 624554
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtg |
390 |
Q |
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||||| ||||||||||||||||||| ||||||| ||||| || ||||||| |
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|
| T |
624603 |
gtcaagtagtttagtggttagagctcacacattttaaatgtggagaagtg |
624554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 37868514 - 37868570
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtc |
397 |
Q |
| |
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||||||||||||||||||||||||| ||||| | ||| | || |||||||| ||||| |
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|
| T |
37868514 |
gtcaaatagtttagtggttagagctcacacaatttaattgtggagaagtgaggtgtc |
37868570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 42433039 - 42433096
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtgaagtgtct |
398 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
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|
| T |
42433039 |
gtcaagtagtttagtggttagagcttacacattttaaatatggagaaatgaagtgtct |
42433096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 37104193 - 37104144
Alignment:
| Q |
341 |
gtcaaatagtttagtggttagagcttacacattctaaatatgaagaagtg |
390 |
Q |
| |
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|||||||| | ||||||||| |||| ||||||| |||||||||||||||| |
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| T |
37104193 |
gtcaaataatctagtggttaaagctcacacattttaaatatgaagaagtg |
37104144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 11954212 - 11954252
Alignment:
| Q |
352 |
tagtggttagagcttacacattctaaatatgaagaagtgaa |
392 |
Q |
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||||||||| |||||||||||| |||||||| ||||||||| |
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| T |
11954212 |
tagtggttaaagcttacacattataaatatggagaagtgaa |
11954252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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