View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_low_12 (Length: 351)
Name: NF11413_low_12
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 23367077 - 23366753
Alignment:
| Q |
6 |
aaagcattaaaaagtgaactaaagaaaaatctactagctagtatcactctttcttacctccttgacgccaatggtgacatacttttccttcaaatcctta |
105 |
Q |
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| T |
23367077 |
aaagcattaaaaagtgaactaaagaaaaatctactagctagtatcactctt----acctccttgacgccaatggtgacatgcttttccttcaaatcctta |
23366982 |
T |
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| Q |
106 |
agaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaagggtgctatgaccaaatcatcagtagcaacatacatagctggacccttga |
205 |
Q |
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| T |
23366981 |
agaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaagggtgctatggccaaatcatcagtagcaacatacatagctggacccttga |
23366882 |
T |
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| Q |
206 |
cataaccttcatgacttgccatgttagaaaaatttattctcttaaactttccagcataactcttatcttcaccaggtttggaaaattgaacaaagagact |
305 |
Q |
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| T |
23366881 |
cataaccttcatgacttgccatgttagaaaaatttattctcttaaactttccagcataactcttatcctcaccaggtttggaaaattgaacaaagagact |
23366782 |
T |
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| Q |
306 |
acttccactgtagtaccaataatattcat |
334 |
Q |
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| T |
23366781 |
acttccactgtagtaccaataatattcat |
23366753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 22632707 - 22632861
Alignment:
| Q |
59 |
ttacctccttgacgccaatggtgacatacttttccttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaaggg |
158 |
Q |
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| T |
22632707 |
ttacctccttggtgccaatggtgacaactttttccttcaaatcattaagaggagttttcagtcggttaagtaaacccaaagctgaaattggagtcaatgg |
22632806 |
T |
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| Q |
159 |
tgcta---tgaccaaatcatcagtagcaacatacatagctggacccttgacataa |
210 |
Q |
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| T |
22632807 |
tgctacattaaccaaatcatctgtagcaaaatacatagctggacccttgacataa |
22632861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 22626469 - 22626316
Alignment:
| Q |
59 |
ttacctccttgacgccaatggtgacatacttttccttcaaatccttaagaggagttttcaatcggttaagtaaacctaatgcagaaattggagacaaggg |
158 |
Q |
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|||||||||||| |||||| |||| | ||||||||||| || ||||||||||| ||||| |||||||||||||| || || || ||||||| ||||| |
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| T |
22626469 |
ttacctccttgatgccaattgtgataactttttccttcaattcattaagaggagtattcaaacggttaagtaaacccaaagctgagattggagttaaggg |
22626370 |
T |
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| Q |
159 |
tgctatgaccaaatcatcagtagcaacatacatagctggacccttgacataacc |
212 |
Q |
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||||| |||| |||||| ||||| | |||||||||||||||||| |||||||| |
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| T |
22626369 |
tgctacaaccagatcatctgtagcgaaatacatagctggacccttaacataacc |
22626316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 22626280 - 22626229
Alignment:
| Q |
245 |
tcttaaactttccagcataactcttatcttcaccaggtttggaaaattgaac |
296 |
Q |
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||||||| ||||||||||| ||||||||| ||||||||||| ||| |||||| |
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| T |
22626280 |
tcttaaaatttccagcatagctcttatctacaccaggtttgaaaatttgaac |
22626229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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