View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_low_3 (Length: 589)
Name: NF11413_low_3
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 169 - 572
Target Start/End: Complemental strand, 33882404 - 33882001
Alignment:
| Q |
169 |
atgtgtttccaatccaatcactgcaccttgagctatcatatcaagaccaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgt |
268 |
Q |
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| T |
33882404 |
atgtgtttccaatccagtccttgcaatttgagctatcaaatcaagatcaaagaatcttttaatcttttcatccaatgcttcaagttcttcttgatactgt |
33882305 |
T |
|
| Q |
269 |
gcttttttgtaacaacaattccaccactggattttgtcttcattagaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcg |
368 |
Q |
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| T |
33882304 |
gcttttttgtaccaacaattccaccactggattttgtcttcattagaacattttagaacaagttcttttccatctttcatttgtttgattattctctttg |
33882205 |
T |
|
| Q |
369 |
tttcattaggtgatcggtccaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttgg |
468 |
Q |
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| T |
33882204 |
tttcattaggtgatcggttcaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttctaagcgttctagagttgg |
33882105 |
T |
|
| Q |
469 |
tttgaacttctcagctctgtctttcattttaataactgaattcaatagttcctcaattactataccaacaacagcatcaaccatagtgatgacctgctaa |
568 |
Q |
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| T |
33882104 |
tttgaacttcacagctctgtctttcatttcaataactgaattcaatagttcctcaattactataccaacaacagcatcaaccatagtgatgacctgctaa |
33882005 |
T |
|
| Q |
569 |
gaac |
572 |
Q |
| |
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|||| |
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| T |
33882004 |
gaac |
33882001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 33866739 - 33866208
Alignment:
| Q |
18 |
tcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattctct-aattcaatccttt |
116 |
Q |
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| T |
33866739 |
tcaacaatctcatcttcaactcattcaaaggaccatccaacccaacaataaaaccaggtggttgaggtggcaaacaaacac-ctcttaattcaactcttt |
33866641 |
T |
|
| Q |
117 |
cattcctcacaagaata--ctt-cgaatttcagcacgaaactctttaatctccaaatgtgtttccaatccaatcactgcaccttgagctatcatatcaag |
213 |
Q |
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| T |
33866640 |
cacttctcccaacattagccttactaaattcagcacgaaactctttaatctccaaaagtgtttccaatccagtcactgcaccttgagctatcatatcaag |
33866541 |
T |
|
| Q |
214 |
accaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
313 |
Q |
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| T |
33866540 |
accaaagaatcttttaatctcttcatccaatgcttcaagttgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
33866441 |
T |
|
| Q |
314 |
gaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcgtttcattaggtgatcggtccaacttcttgttgagttcatctattt |
413 |
Q |
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| T |
33866440 |
gaacattttagaacaagttcttttccatctttcatttgtttgatcagtgtttttgtttcattgggtgaatgatccaatttcttcttgagttcatctattt |
33866341 |
T |
|
| Q |
414 |
gattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttggtttgaacttctcagctctgtctttcattttaataactgaattcaa |
513 |
Q |
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|||||||||||||| ||||||||| || || ||| ||| | ||||||||||||||||||||| |||| ||| ||||| | || ||||||| ||| |
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| T |
33866340 |
gattgatcaatggtcctaatgattgaagtgtagcttctaatctatctagagttggtttgaacttcaaagctttgttcttcatgtcaacaactgaactcat |
33866241 |
T |
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| Q |
514 |
tagttcctcaattactataccaacaacagcatc |
546 |
Q |
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|||||| |||| || | | |||||||||||||| |
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| T |
33866240 |
tagttcttcaactaatttcccaacaacagcatc |
33866208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33882599 - 33882446
Alignment:
| Q |
1 |
aagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33882599 |
aagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccgacccaacaataaaaccaggtggtttaggaggccgacaaatattc |
33882500 |
T |
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| Q |
101 |
tctaat------tcaatcctttcattcctcacaagaatacttcgaatttcagca |
148 |
Q |
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| T |
33882499 |
tctaattcaaattcaatcctttcagtcctcacaagaacacttcgaatttcagca |
33882446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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