View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_low_5 (Length: 479)
Name: NF11413_low_5
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 49462638 - 49462185
Alignment:
| Q |
17 |
atgatacaccatcatctttgaacaaattcagatttggcagctttggattcttggctggcttactgcctagaaaatttgctccatcaaggagcttaattca |
116 |
Q |
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| T |
49462638 |
atgatacaccatcatctttgaacaaattcagatttggcagctttggattcttggctggcttactgcctagaaaatttgctccatcaaggagcttaattca |
49462539 |
T |
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| Q |
117 |
tactgcctttgagaaagtatgtgtatgagataatgcaaaggacttatagagcaatgcaagggacttgtagcagtcttgaggtaatgtaatgcctaattta |
216 |
Q |
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| T |
49462538 |
tactgcctttgagaaagtatgtgtatgagataatgcaaaggacttatagagcaatgcaagggacttgtagcagtcttgagataatgtaatgcctaattta |
49462439 |
T |
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| Q |
217 |
tttattcttgaaataaatgtcaaaaacaaaatcaagcaggtaacaacaaataccattcaagagtcccacgaagaagtataacaatcctacgaagaagctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49462438 |
tttattcttgaaataaatgtcaaaaacaaaatcaagcaggtaacaacaaataccattcaagagtcccacgaag-agtataacaatcctacgaagaagctt |
49462340 |
T |
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| Q |
317 |
gaaggcaaaagctaaactcaatagcaggaccaggaaataagccaccaagattggccagtgagcaataccaatatgctatattatatttataccactgctg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49462339 |
gaaggcaaaagctaaactcaatagcaggaccaggaaataagccaccaagattggccagtgagcaataccaatatgctata------ttataccactgctg |
49462246 |
T |
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| Q |
417 |
ctctaggcatatgtcttgaggcagcaagacccacagtttcactaactttaaccgatttaatcc |
479 |
Q |
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| T |
49462245 |
ctctaggc--atgtcttgaggcagcaagacccgcagtttcactaactttaaccgatttaatcc |
49462185 |
T |
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