View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11413_low_7 (Length: 460)
Name: NF11413_low_7
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_low_7 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0649 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 515 - 82
Alignment:
| Q |
1 |
ccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
515 |
ccaagttatacatatgtcaaacactggagacaagtatgttgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgt |
416 |
T |
|
| Q |
101 |
tgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
415 |
tgtcatgccatttcttgcatgaaatacaaaaattataggatagctgagtatgtgccatcaattttcaaaaaagagcaatatgctgcatgttattccagca |
316 |
T |
|
| Q |
201 |
tcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
315 |
tcattttccctatcaatggccaagatttatggatgaggatagactgc----atcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaa |
220 |
T |
|
| Q |
301 |
gaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219 |
gaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaac |
120 |
T |
|
| Q |
401 |
aagtcaacatgcccactacctccaccaccatcatctca |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119 |
aagtcaacatgcccactacctccaccaccatcatctca |
82 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 43017688 - 43018125
Alignment:
| Q |
1 |
ccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017688 |
ccaagttatacatatgtcaagcactggagacaagtacgctatcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgc |
43017787 |
T |
|
| Q |
101 |
tgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagca |
200 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017788 |
tgtcatgtcatttcttgcatgaaatacaaaaattacaggatagctgactatgtgccatcaattttcaaaaaagagcaatatgctgcatgttattccagca |
43017887 |
T |
|
| Q |
201 |
tcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017888 |
tcattttccctatcaatggccaagatctatggatggggacaaactgcactgaccttcaaccaccacctgtgaaaaggcaaccagggagacctaaaaagaa |
43017987 |
T |
|
| Q |
301 |
gaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43017988 |
aaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagaaagcttcttatgggattaagtgtagtaggtgcaagcaaactggacacaac |
43018087 |
T |
|
| Q |
401 |
aagtcaacatgcccactacctccaccaccatcatctca |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43018088 |
aagtcaacatgcccactacctccaccaccatcatctca |
43018125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 15810832 - 15810405
Alignment:
| Q |
1 |
ccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgt |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
15810832 |
ccaagttatatatatgtcaagcactggagacaagtatgatgtcaacttgttggacaaagtgtgtgattgtaggaaatggttgttgacaggactaccattt |
15810733 |
T |
|
| Q |
101 |
tgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
15810732 |
tgtcatgccatttcttgcatgaaacacaaaaattataggatagctgactatgtgccatcaattttaaaaaaagagcaatatgctgcatgttattccagca |
15810633 |
T |
|
| Q |
201 |
tcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15810632 |
tcattttccctatcaatggccaagat----------cgacagactgcactgaccttcaaccaccacttgtgaaaagccaaccagggagacctaaaaagaa |
15810543 |
T |
|
| Q |
301 |
gaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaac |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
15810542 |
gaggagaatggatacaagtgagctgatgagagataacttacaaatgaagtgagcttcttatgagattaaatgtagtaggtgcaagcaaactggacacaac |
15810443 |
T |
|
| Q |
401 |
aagtcaacatgcccactacctccaccaccatcatctca |
438 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
15810442 |
aagtcaacgtgcccaccacctccaccaccatcatctca |
15810405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 5 - 429
Target Start/End: Original strand, 27655626 - 27656050
Alignment:
| Q |
5 |
gttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtc |
104 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| |||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
27655626 |
gttacacatatgtcacagactggagacaagtttgctgtaaacttgttgaacaaaatttgtgattgcaggaaatggttgttgacaggactgccatgctgtc |
27655725 |
T |
|
| Q |
105 |
atgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcat |
204 |
Q |
| |
|
|||||||| | |||||||| || |||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||| | |||||| ||||||| ||| |
|
|
| T |
27655726 |
atgccattgcttgcatgaagtataaaaattacaagatagctgattatgtgccatcaatattcaagaaagagcaatatgcagaatgttactccagcaacat |
27655825 |
T |
|
| Q |
205 |
tttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagagg |
304 |
Q |
| |
|
|||||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| ||| ||||||||||| |||| |||||||||| |||||| |
|
|
| T |
27655826 |
tttcccaataaatggccaagatctatgggtgaccacagaatgcactgatcttcaaccaccacctatgaaaaggcaatcaggtagacctaaaacgaagaga |
27655925 |
T |
|
| Q |
305 |
agaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagt |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
27655926 |
agattggatgcaagtgagctgatgagagatgacaaacagatgaagagagccagttatggaattaagtgtagtaggtgcaagcaaactggacacaacaaat |
27656025 |
T |
|
| Q |
405 |
caacatgcccactacctccaccacc |
429 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
27656026 |
caacatgcacactacctccaccacc |
27656050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 430
Target Start/End: Complemental strand, 21543222 - 21542797
Alignment:
| Q |
5 |
gttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtc |
104 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||| |||||| || ||| || ||||||| ||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
21543222 |
gttacacatatgtcacatactagagacaagtttgctgtaaatttgatgaacaaagtttgtgattgcagaaaatggttgttgacaggactgccatgatgtc |
21543123 |
T |
|
| Q |
105 |
atgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcat |
204 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||||| |
|
|
| T |
21543122 |
atgccattgcttgcatgaagtacaaaaattacaatatagttgactatgtgccatcaatattcaagaaagagcaatatgcagaatgttactccagcatcat |
21543023 |
T |
|
| Q |
205 |
tttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagagg |
304 |
Q |
| |
|
||| || || |||||||||||| | |||| || ||| | ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21543022 |
ttttccaataaatggccaagatctttgggagaccacaaaatgcactgattttcaaccaccacctgtgaaaaggcaaccaggtagacctaaaaagaagaga |
21542923 |
T |
|
| Q |
305 |
agaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagt |
404 |
Q |
| |
|
||| |||||||||||||||||||| ||||| | ||| ||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
21542922 |
agattggatgcaagtgagctgatgggagatgaaaaacagatgaagagagccagttatggaattaagtgtagcaggtgcaagcaaactggacacaacaaat |
21542823 |
T |
|
| Q |
405 |
caacatgcccactacctccaccacca |
430 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
21542822 |
caacatgcacactacctccaccacca |
21542797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 195 - 427
Target Start/End: Original strand, 38800019 - 38800251
Alignment:
| Q |
195 |
ccagcatcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaa |
294 |
Q |
| |
|
||||||| ||| | ||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
38800019 |
ccagcatgattcttcctgtcaatggccaagacttatggaagaggacagaatgcactgatcttcaaccaccacctgtgaaaaggcaacctggtagacctaa |
38800118 |
T |
|
| Q |
295 |
aaagaagaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttgga |
394 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| || ||||||||| |||| |
|
|
| T |
38800119 |
aaagaagaggagattggatgcaagtgagctgatgagagacaactcagaaatgaagagagctacatatggaattaagtgtagcagttgcaagcaaactgga |
38800218 |
T |
|
| Q |
395 |
cacaacaagtcaacatgcccactacctccacca |
427 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
38800219 |
cacaacaagtcaacatgcccactacctacacca |
38800251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 25561400 - 25561339
Alignment:
| Q |
62 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25561400 |
tgtgattgtaggagatggttgttgacaggtttaccatgttgtcatgccatttcctgcatgaa |
25561339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 171 - 453
Target Start/End: Original strand, 8511798 - 8512081
Alignment:
| Q |
171 |
aagagcaatatgctgcatgttattccagcatcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
8511798 |
aagagcaatatgctgcatgttattccagcatcattttccctatcaatggccaagatttatggatgaggacagactgcactgatcttcaaccacctccagt |
8511897 |
T |
|
| Q |
271 |
gaaaaggcaaccagggagacctaaaa-agaagaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaa |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8511898 |
gaaaaggcaaccagggagacctaaaaaagaagagaagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaa |
8511997 |
T |
|
| Q |
370 |
gtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctccaccaccatcatctcatgcaacttcatctca |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
8511998 |
gtgtagtaggtgcaagcaagttggacacaagaagtcaacatgcccactacctccaccaccatcatctcagccaccttcatctca |
8512081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 37101561 - 37101500
Alignment:
| Q |
62 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37101561 |
tgtgattgtaggagatggttgttgacaggtttaccatgttgtcatgccatttcctgcatgaa |
37101500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 20623756 - 20623796
Alignment:
| Q |
83 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
20623756 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
20623796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 427
Target Start/End: Original strand, 11386628 - 11387053
Alignment:
| Q |
2 |
caagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgtt |
101 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
11386628 |
caagttacacatatttcaaacactggagacaaatatgctgtaaacttgttggataaagtatgtgattgcaggaaatggctattgacaggacttccatgtt |
11386727 |
T |
|
| Q |
102 |
gtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcat |
201 |
Q |
| |
|
||||||||||| | |||||||| ||||||| || ||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11386728 |
gtcatgccattgcttgcatgaagcacaaaaactataggatagctgactatgttccaccaatattcaaaaaagagcagtatgctgcatgttattccagcat |
11386827 |
T |
|
| Q |
202 |
cattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaag |
301 |
Q |
| |
|
||| | ||| |||||| |||||| |||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
11386828 |
aattcttcctgtcaatgaccaagacttatggaagaggacagaatgcactgatcttcaaccaccacctatgaaaaggcaacctggtagacctaaaaagaag |
11386927 |
T |
|
| Q |
302 |
aggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaaca |
401 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||| |||||||||||||| | ||||| | |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
11386928 |
aggagattggatgcaagtgagctgatgagaaacaactcagaaatgaagagagctacatatggaagtaagtgtagtagttgcaagcaaactggacacaaca |
11387027 |
T |
|
| Q |
402 |
agtcaacatgcccactacctccacca |
427 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
11387028 |
agtcaacatgcccactacctacacca |
11387053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 417
Target Start/End: Original strand, 26450198 - 26450591
Alignment:
| Q |
24 |
ctggagacaagtatgctgtcaacttgttggacaaag-tgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
122 |
Q |
| |
|
||||||||||||||||||| |||||| | |||| | |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | ||||||| |
|
|
| T |
26450198 |
ctggagacaagtatgctgttaacttgcag-acaatgctgtgtgattgcaggaaatggaatttgacaggacttccatgctgtcatgccattgcttgcatga |
26450296 |
T |
|
| Q |
123 |
aatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcattttccctatcaatggcca |
222 |
Q |
| |
|
|| ||||| |||||| || ||||||||||| |||| | | ||| ||||| |||||||| |||||||| ||||| || | ||| |||||| | |
|
|
| T |
26450297 |
aacacaaacattacaacattgctgactatgtaccatgcatgtacaagaaagaagcatatgctgagtgttattcaagcatgatatatcctgccaatggaga |
26450396 |
T |
|
| Q |
223 |
agatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagaggagaatggatgcaagtgag |
322 |
Q |
| |
|
| || | ||| ||||||| || | || |||||||||||||| || | |||| ||||| || |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
26450397 |
aaatctttggatgaggactgaatatacagatcttcaaccaccagctatcaaaaaacaacctggaagacctaaaaagaaaaggagattggatgcaagtgag |
26450496 |
T |
|
| Q |
323 |
ctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccact |
417 |
Q |
| |
|
|| | ||||| | |||| |||||||||| || ||||| || ||||| ||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
26450497 |
cttctcagagaagaaggacaattgaagagagcatcatatggaataaagtgcagtaggtgcaagcaatctagacacaataagtcaacatgcccact |
26450591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 19836423 - 19836484
Alignment:
| Q |
62 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19836423 |
tgtgattgtaggaaatggttgttgacaggcttaccatgttgtcatgccatttcctgcatgaa |
19836484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 29749024 - 29749126
Alignment:
| Q |
327 |
tgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctccacc |
426 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| |||||||||||||| || ||| |||||| ||||| || ||||||||| || |||||||| |
|
|
| T |
29749024 |
tgagagatgattcacaaatgaagagagcaaggtatggaattaagtgtagtagatgtaagtcagttggccacaataaatcaacatgcaagctgcctccacc |
29749123 |
T |
|
| Q |
427 |
acc |
429 |
Q |
| |
|
||| |
|
|
| T |
29749124 |
acc |
29749126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 21775897 - 21775857
Alignment:
| Q |
83 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
21775897 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
21775857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 427
Target Start/End: Complemental strand, 21792706 - 21792281
Alignment:
| Q |
2 |
caagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgtt |
101 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
21792706 |
caagttacacatatttcaaacactggagacaaatatgctgtaaacttgttggataaagtatgtgattgcaggaaatggctattgacaggacttccatgtt |
21792607 |
T |
|
| Q |
102 |
gtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcat |
201 |
Q |
| |
|
||||||||||| | |||||||| ||||||| || ||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21792606 |
gtcatgccattgcttgcatgaagcacaaaaactataggatagctgactatgttccaccaatattcaaaaaagagcagtatgctgcatgttattccagcat |
21792507 |
T |
|
| Q |
202 |
cattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaag |
301 |
Q |
| |
|
||| | ||| |||||| |||||| |||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
21792506 |
aattcttcctgtcaatgaccaagacttatggaagaggacagaatgcactgatcttcaaccaccgcctatgaaaaggcaacctggtagacctaaaaagaag |
21792407 |
T |
|
| Q |
302 |
aggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaaca |
401 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||| |||||||||||||| | ||||| | |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
21792406 |
aggagattggatgcaagtgagctgatgagaaacaactcagaaatgaagagagctacatatggaagtaagtgtagtagttgcaagcaaactggacacaaca |
21792307 |
T |
|
| Q |
402 |
agtcaacatgcccactacctccacca |
427 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
21792306 |
agtcaacatgcccactacctacacca |
21792281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 32 - 430
Target Start/End: Complemental strand, 32414057 - 32413659
Alignment:
| Q |
32 |
aagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaa |
131 |
Q |
| |
|
|||| |||||| |||||| || ||||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||| | |||||||| ||||||| |
|
|
| T |
32414057 |
aagtttgctgtaaacttgatgaacaaagtttgtgattgcaggaaatggttgttgacaggactgtcatgctgtcatgacattgcttgcatgaagtacaaaa |
32413958 |
T |
|
| Q |
132 |
attacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcattttccctatcaatggccaagatttatg |
231 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||| || ||||| |||||| | || |
|
|
| T |
32413957 |
attacaacatagctgactatgtgccatcaatattcaagaaagagcaatatgcagaatgttactccagcatcattttcccaataaatggtcaagatctttg |
32413858 |
T |
|
| Q |
232 |
ggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagaggagaatggatgcaagtgagctgatgaga |
331 |
Q |
| |
|
|| || ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
32413857 |
ggagaccacagaatgcactgatcttcaaccaccacctgtgaaaaggcaaccaggtagacctaaaaagaagagaagattggatgcaagtgagctgatgaga |
32413758 |
T |
|
| Q |
332 |
gataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctccaccacca |
430 |
Q |
| |
|
||| || ||| ||||||||||| |||||| ||||||||||| |||||||||||| || ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
32413757 |
gatgacaaacagatgaagagagccagttatggaattaagtgtagcaggtgcaagcaaactgaacacaacaaatcaacatgcacactacctccaccacca |
32413659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 59 - 425
Target Start/End: Complemental strand, 21008280 - 21007914
Alignment:
| Q |
59 |
gtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccat |
158 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||| ||||| |||||| || ||||||||||| ||| |
|
|
| T |
21008280 |
gtgtgtgattgcaggaaatggaatttgacaggacttccatgttgtcatgccattgcttgcatgaaacacaaacattacaacattgctgactatgtaccag |
21008181 |
T |
|
| Q |
159 |
caagcttcaaaaaagagcaatatgctgcatgttattccagcatcattttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttca |
258 |
Q |
| |
|
|| || ||| ||||| |||||||| |||||||| ||||| || | ||| |||||| || || | ||| ||||||| || | || |||||||| |
|
|
| T |
21008180 |
gaatctacaagaaagaagcatatgctgagtgttattcaagcatgatatatcctgccaatggagaaaatctttggatgaggactgaatatacagatcttca |
21008081 |
T |
|
| Q |
259 |
accacctcctgtgaaaaggcaaccagggagacctaaaaagaagaggagaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttct |
358 |
Q |
| |
|
|||||| || | |||| ||||| || |||||||||||||| |||||| |||||||||||||||| | | ||| | ||||||||||||||| || |
|
|
| T |
21008080 |
accaccagctatcaaaaaacaacctggaagacctaaaaagaaaaggagattggatgcaagtgagcttctcaaagaagaaggacaaatgaagagagcatca |
21007981 |
T |
|
| Q |
359 |
tatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctccac |
425 |
Q |
| |
|
||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21007980 |
tatggaataaagtgcagtaggtgcaagcaatctggacacaacaagtcaacatgcccactgcctccac |
21007914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 24506906 - 24506969
Alignment:
| Q |
59 |
gtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
122 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| | || || |||||||||||||||||||||| |
|
|
| T |
24506906 |
gtgtgtgactgtaggaaatggttattgacagggttgccctgctgtcatgccatttcctgcatga |
24506969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 23332139 - 23332179
Alignment:
| Q |
83 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
123 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
23332139 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
23332179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 430
Target Start/End: Complemental strand, 7563956 - 7563531
Alignment:
| Q |
5 |
gttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtc |
104 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| |||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7563956 |
gttacacatatgtcacagactggagacaagtttgctgtaaacttgatgaacaaagtgtgtgattgcaggaaatggttgttgacaggactgacatgatgtc |
7563857 |
T |
|
| Q |
105 |
atgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcat |
204 |
Q |
| |
|
||| |||| | |||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||||| |
|
|
| T |
7563856 |
atgacattgcttgcatgaagtacaaaaattacaacatagctgactatgtgccatcaatattcaagaaagagcaatatgcagaatgttactccagcatcat |
7563757 |
T |
|
| Q |
205 |
tttccctatcaatggccaagatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagagg |
304 |
Q |
| |
|
|||||| || ||||| |||||| | |||| || ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7563756 |
tttcccaataaatggtcaagatctttgggagaccacagaatgcactgatcttcaaccaccacctgtgaaaaggcaaccaggtagacctaaaaagaagaga |
7563657 |
T |
|
| Q |
305 |
agaatggatgcaagtgagctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagt |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
7563656 |
agattggatgcaagtgagctgatgagagatgacaaacagatgaagagagccagttatggaattaagtgtagcaggtgcaagcaaactggacacaacaaat |
7563557 |
T |
|
| Q |
405 |
caacatgcccactacctccaccacca |
430 |
Q |
| |
|
| |||||| ||||||||||||||||| |
|
|
| T |
7563556 |
ccacatgcacactacctccaccacca |
7563531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 425
Target Start/End: Original strand, 43581298 - 43581699
Alignment:
| Q |
24 |
ctggagacaagtatgctgtcaacttgttggacaaag-tgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
122 |
Q |
| |
|
||||||||||||||||||| |||||| | |||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||| | ||||||| |
|
|
| T |
43581298 |
ctggagacaagtatgctgttaacttgcag-acaatggtgtgtgattgcaggaaatggaatttgacaggacttccatgttgtcatcccattgcttgcatga |
43581396 |
T |
|
| Q |
123 |
aatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcattttccctatcaatggcca |
222 |
Q |
| |
|
|| ||||| |||||| || ||||||||||| ||| || || ||| ||||| ||||| || |||||||| ||||| || | ||| |||||| | |
|
|
| T |
43581397 |
aacacaaatattacaacattgctgactatgtaccaggaatctacaagaaagaagcatatgttgagtgttattcaagcatgatatatcctgccaatggaga |
43581496 |
T |
|
| Q |
223 |
agatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagaggagaatggatgcaagtgag |
322 |
Q |
| |
|
| || | ||| ||||||| || | || |||||||||||||| || | |||| ||||| || ||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
43581497 |
aaatctttggatgaggactgaatatacagatcttcaaccaccagctatcaaaaaacaacctggaggacctaaaaagaaaaggagattggatgtaagtgag |
43581596 |
T |
|
| Q |
323 |
ctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctc |
422 |
Q |
| |
|
|| | ||||| | ||||||||||||||| || ||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
43581597 |
cttctcagagaagaaggacaaatgaagagagcatcatatggaataaagtgcagtaggtgcaagcaatctggacacaacaagtcaacatgcccactgcctc |
43581696 |
T |
|
| Q |
423 |
cac |
425 |
Q |
| |
|
||| |
|
|
| T |
43581697 |
cac |
43581699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 24746433 - 24746040
Alignment:
| Q |
24 |
ctggagacaagtatgctgtcaacttgttggacaaagt-gtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
122 |
Q |
| |
|
||||||||||||||| ||| |||||| | |||| || ||||||||||||||||||| ||||||||||| |||| |||||||||||| | ||||||| |
|
|
| T |
24746433 |
ctggagacaagtatgttgttaacttgcag-acaatgttgtgtgattgcaggaaatggaatttgacaggactttcatgctgtcatgccattgcttgcatga |
24746335 |
T |
|
| Q |
123 |
aatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcattttccctatcaatggcca |
222 |
Q |
| |
|
|| ||||| |||||| || ||||||||||| |||| | | ||| ||||| ||||| || |||||||| ||||| || | ||| |||||| | |
|
|
| T |
24746334 |
aacacaaacattacaacattgctgactatgtaccatgcatgtacaagaaagaagcatatgttgagtgttattcaagcatgatatatcctgccaatggaga |
24746235 |
T |
|
| Q |
223 |
agatttatgggtgaggacagactgcactgatcttcaaccacctcctgtgaaaaggcaaccagggagacctaaaaagaagaggagaatggatgcaagtgag |
322 |
Q |
| |
|
| || | ||| ||||||| || | || |||||||||||||| || | |||| ||||| || |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
24746234 |
aaatctttggatgaggactgaatatacagatcttcaaccaccagctatcaaaaaacaacctggaagacctaaaaagaaaaggagattggatgcaagtgag |
24746135 |
T |
|
| Q |
323 |
ctgatgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccact |
417 |
Q |
| |
|
|| | ||||| | ||||||||||||||| || ||||| || || || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24746134 |
cttcttagagaagaaggacaaatgaagagagcatcatatggaataaaatgcagtaggtgcaagcaatctggacacaacaagtcaacatgcccact |
24746040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 27693459 - 27693561
Alignment:
| Q |
327 |
tgagagataactcacaaatgaagagagcttcttatgggattaagtgtagtaggtgcaagcaagttggacacaacaagtcaacatgcccactacctccacc |
426 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| |||||||||||||| || ||| |||||| ||||| || ||||||||| || |||||||| |
|
|
| T |
27693459 |
tgagagatgattcacaaatgaagagagcaaggtatggaattaagtgtagtagatgtaagtcagttggccacaataaatcaacatgcaagctgcctccacc |
27693558 |
T |
|
| Q |
427 |
acc |
429 |
Q |
| |
|
||| |
|
|
| T |
27693559 |
acc |
27693561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 20067786 - 20067847
Alignment:
| Q |
61 |
gtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
122 |
Q |
| |
|
|||||| || ||||||||| | |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
20067786 |
gtgtgactgtaggaaatggcttttgacaggtttgccatgctgtcatgccatttcctgcatga |
20067847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University