View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11413_low_9 (Length: 452)
Name: NF11413_low_9
Description: NF11413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11413_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 25498609 - 25498185
Alignment:
| Q |
14 |
cacagacataaaagttggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagcaggtggagatttgtttacaaatcaaggc |
113 |
Q |
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| T |
25498609 |
cacagacataaaagttggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagcaggtggagatttgtttacaaatcaaggc |
25498510 |
T |
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| Q |
114 |
ttttatgttaaggtttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatccttagtgacaagattcagttaggccagt |
213 |
Q |
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| T |
25498509 |
ttttatgttaaggtttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatcctaagtgacaagattcagttaggccagt |
25498410 |
T |
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| Q |
214 |
ttgtttttgttgatcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaaga |
313 |
Q |
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| T |
25498409 |
ttgtttttgttgatcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaaga |
25498310 |
T |
|
| Q |
314 |
tattgttgcaactaactcacttggttttcttagcaatgcttctgaggttaaggttaagaggaatggtgtttgttccaagtcctctccaatgaaagtgttg |
413 |
Q |
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| T |
25498309 |
tattgttgcaactaactcacttggttttcttagcaatgcttctgaggttaaggttaagaggaatggtgtttgttccaagtcctctccaatgaaagtgttg |
25498210 |
T |
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| Q |
414 |
gagaatcatcaagaacaagttgata |
438 |
Q |
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| T |
25498209 |
gagaatcatcaagaacaagttgata |
25498185 |
T |
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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 42469027 - 42468732
Alignment:
| Q |
30 |
ggtggtgaacatagatcatcattgttacaagttgtgagcattgttccagcactagc---aggtggagatttgtttacaaatcaaggcttttatgttaagg |
126 |
Q |
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||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || |||||| || | ||| |||||||||| |||||| |||||| |
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| T |
42469027 |
ggtggtgaacacagatcatcactgttacaagttgttagcattgttccagcacttgcttcaggtggcgaactttttccaaatcaaggtttttatcttaagg |
42468928 |
T |
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| Q |
127 |
tttctgattcatcacatgccacttatgtctctctccctgatgaacatgatgatctaatccttagtgacaagattcagttaggccagtttgtttttgttga |
226 |
Q |
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| T |
42468927 |
tttctgattcatctcatgctacttatgtttctttacctgatgaacatgatgatttgattttgagtgataaaattcaattgggtcagtttgtttttgttga |
42468828 |
T |
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| Q |
227 |
tcggttcgaagctgcttcgcctgttccgattcttcgtggtgttaggcctgttcctggaagacatgcttgtgttggaacacctgaagatattgttgc |
322 |
Q |
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| T |
42468827 |
tcgttttgaagcttcttcacctgttcctgtaattaggggtgttaaacctgttcctggtagacatccttgtgttggtacacctgaggatattgttgc |
42468732 |
T |
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