View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11414_high_5 (Length: 250)
Name: NF11414_high_5
Description: NF11414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11414_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 1137275 - 1137519
Alignment:
| Q |
6 |
agaagcagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttcttc |
105 |
Q |
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| T |
1137275 |
agaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtcctactttcagaacattgcataccattgttcaatttcttc |
1137374 |
T |
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| Q |
106 |
acaatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgacac |
205 |
Q |
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| T |
1137375 |
acaatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgtgtc |
1137474 |
T |
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| Q |
206 |
cattgattcaactttcacaatggagaaaaggggctcaatggttcc |
250 |
Q |
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| T |
1137475 |
cattgattcaactttcacaatggagaaaaggggctcaatggttcc |
1137519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 1140736 - 1140980
Alignment:
| Q |
6 |
agaagcagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttcttc |
105 |
Q |
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| T |
1140736 |
agaagcagaaagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttctcc |
1140835 |
T |
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| Q |
106 |
acaatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgacac |
205 |
Q |
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| T |
1140836 |
acaatctacacttatctaatgaactcaaaacaaacatttgtggaagcaattgatataccaagtgatgtaggacgtggaagatataaccgtagaatgagac |
1140935 |
T |
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| Q |
206 |
cattgattcaactttcacaatggagaaaaggggctcaatggttcc |
250 |
Q |
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| T |
1140936 |
cattgattcaactttcacaatggagaaaaggggctcaatggttcc |
1140980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 54474826 - 54474591
Alignment:
| Q |
13 |
gagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttcttcacaatct |
112 |
Q |
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|||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |
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| T |
54474826 |
gagaaacgtctactagcaaatgcattgctcgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctccacaatat |
54474727 |
T |
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| Q |
113 |
acacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgacaccattgat |
212 |
Q |
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| T |
54474726 |
acacttatctaatgaactcaagactatcatttgtggaagctaatgatatccgaggtgcacaaggacgtggaagatacaactaccgaatgaggccattgat |
54474627 |
T |
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| Q |
213 |
tcaactttcacaatggagaaaaggggctcaatggtt |
248 |
Q |
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| T |
54474626 |
tgaactttcacaatggagaaaagggtctcaatggtt |
54474591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 31266884 - 31266642
Alignment:
| Q |
6 |
agaagcagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttcttc |
105 |
Q |
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||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31266884 |
agaagcagaaagacgtttactagcaaatgcattgcttgatttctcaaaccaacgttttgtactactttcagaatcatgcataccattgttcaatttctct |
31266785 |
T |
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| Q |
106 |
acaatctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatgatattccaggtcgtgtaggacgtgtaagatataaccgtagaatgacac |
205 |
Q |
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|||||||||||||| |||||||| ||| | |||| ||||||||||| |||| | |||| || ||||||| ||||| ||| || ||||| | |
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| T |
31266784 |
acaatctacacttacctaatgaactcagagaaaacctttgtggaagcctatgacctagaaggtgccgttggacgtggtagatacaactataaaatgagtc |
31266685 |
T |
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| Q |
206 |
cattgattcaactttcacaatggagaaaaggggctcaatggtt |
248 |
Q |
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| T |
31266684 |
cattgattaaactttcacaatggagaaaagggtcacaatggtt |
31266642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 48323684 - 48323536
Alignment:
| Q |
10 |
gcagagagacgtctactagcaaatgcactgcttgatttctcaaaccaacgttttgtactactttcagaacattgcataccattgttcaatttcttcacaa |
109 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
48323684 |
gcagagaggcgtctactagcaaatgcattgcttgatttctcaaaccaaagatttgtactactttcagaatcatgtataccattgttcaatttctccacaa |
48323585 |
T |
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| Q |
110 |
tctacacttatctaatgaaatcaaaacaaacatttgtggaagctaatga |
158 |
Q |
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| T |
48323584 |
tttatacttatctaatgaactcaaatgaaacctttgtggaagccaatga |
48323536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 395619 - 395573
Alignment:
| Q |
32 |
atgcactgcttgatttctcaaaccaacgttttgtactactttcagaa |
78 |
Q |
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| T |
395619 |
atgcactacttgatttatcaaaccaacgttttatactactttcagaa |
395573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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