View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11414_high_6 (Length: 206)

Name: NF11414_high_6
Description: NF11414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11414_high_6
NF11414_high_6
[»] chr8 (2 HSPs)
chr8 (102-190)||(43073904-43073995)
chr8 (16-46)||(43073815-43073845)
[»] chr4 (1 HSPs)
chr4 (102-160)||(53753138-53753196)
[»] chr1 (1 HSPs)
chr1 (131-170)||(28534065-28534104)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 43073904 - 43073995
Alignment:
Q  102 accaacaccaacacgggatctgattccatcacc---accaccaccaacatcatcgaactcttgaatcaacactttctttgctatgttgtcca 190  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43073904 accaacaccaacacgggatctgattccatcaccaccaccaccaccaacatcatcgaactcttcaatcaacactttctttgctatgttgtcca 43073995  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 43073815 - 43073845
Alignment:
Q  16 tgaaaagaccataatgcccttgacttattta 46  Q
    |||||||||||||||||||||||||||||||    
T  43073815 tgaaaagaccataatgcccttgacttattta 43073845  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 53753196 - 53753138
Alignment:
Q  102 accaacaccaacacgggatctgattccatcaccaccaccaccaacatcatcgaactctt 160  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53753196 accaccaccaacacgagatctgattccatcaccaccaccaccaacatcatcgaactctt 53753138  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 28534065 - 28534104
Alignment:
Q  131 caccaccaccaccaacatcatcgaactcttgaatcaacac 170  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  28534065 caccaccaccaccaacatcatcgaactcttcaatcaacac 28534104  T

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