View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11414_low_2 (Length: 610)
Name: NF11414_low_2
Description: NF11414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11414_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 349 - 599
Target Start/End: Original strand, 38462201 - 38462450
Alignment:
| Q |
349 |
ttttaaaaccatattcgacatgtagaagtattgaaagatctttgtccattccttattccannnnnnnnnnccttcctgcatataaaggcaaggtcatggc |
448 |
Q |
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| T |
38462201 |
ttttaaaaccatattcgacatgtagaagtattgaaagatctttgtacattccttattccattttttttt-ccttcctgcatataaaggcaaggtcatggc |
38462299 |
T |
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| Q |
449 |
tttcctcactctgagaatgtgtacagcaaagttgactctgtaatcgcagatctttgtcatgactgtgccagacgcatgttccatgttgttgtctaacaac |
548 |
Q |
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| T |
38462300 |
tttcctcactctgagaaggtgtacagaaaagttgactctgtaatcggagatctttgtcatgactgtgccagacgcatgttccaagttgttgtctaacaac |
38462399 |
T |
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| Q |
549 |
ggagaccctataataaggtaacactgaatgatcattttcatgttttgatgt |
599 |
Q |
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| T |
38462400 |
ggagaccctataataaggtaacactgaatgatcattttcatgttttgatgt |
38462450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 38450069 - 38450214
Alignment:
| Q |
20 |
ggatgtgtgtgtaaatgcaactcttcctactgatataccacttgatattgaagatgattgtttcgcatctgctacttcccaaggaactcgtatagtccat |
119 |
Q |
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| T |
38450069 |
ggatgtgtgtgtaaatgcaactcttcctactgatataccacttgatattgaagatgattgtttcgcatctgctacttcccaaggaactcgtatagtccat |
38450168 |
T |
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| Q |
120 |
caaagaagaaaatatgtggctgtttttcataggaaagtgattcaaa |
165 |
Q |
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| T |
38450169 |
caaagaagaaaatatgtggctgtttttcataggaaagtgattcaaa |
38450214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 263 - 407
Target Start/End: Original strand, 48753768 - 48753910
Alignment:
| Q |
263 |
gcctcatctctaaaggggtctcatttagccttaaatttgatttgatataagatttgttatggttctttttcaaagttctaaggttgttttaaaaccatat |
362 |
Q |
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| T |
48753768 |
gcctcgtctttaaagggctctcatttaaccttaaatttgattggagacatgatttgttatggttctttt-caaagttctaaggttgttttaaaaccatat |
48753866 |
T |
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| Q |
363 |
tcgacatgtagaagtattgaaagatctttgtccattccttattcc |
407 |
Q |
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| T |
48753867 |
ttgatatgtacaagtattgaacgat-tttgcacattccttattcc |
48753910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 594
Target Start/End: Original strand, 48754091 - 48754152
Alignment:
| Q |
533 |
gttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgtttt |
594 |
Q |
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| T |
48754091 |
gttgttgtctaacaatggagaccctacaataacgtaagattgaatgatcattttcacgtttt |
48754152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 48754612 - 48754652
Alignment:
| Q |
206 |
ttttacctttcacatctactttgtcacttgggtattgttgt |
246 |
Q |
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| T |
48754612 |
ttttacctttcacatctacttagtcacttaggcattgttgt |
48754652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 282 - 408
Target Start/End: Complemental strand, 52091885 - 52091761
Alignment:
| Q |
282 |
ctcatttagccttaaatttgatttgatataagatttgttatggttctttttcaaagttctaaggttgttttaaaaccatattcgacatgtagaagtattg |
381 |
Q |
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| T |
52091885 |
ctcatttaaccttaaatttgattggagacatgatttgttatggttctttt-caaagttctaagattgttt-aaaaccatatttgatatgtagaagtattg |
52091788 |
T |
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| Q |
382 |
aaagatctttgtccattccttattcca |
408 |
Q |
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| T |
52091787 |
aacgatctttgcacattccttattcca |
52091761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 533 - 594
Target Start/End: Complemental strand, 52091585 - 52091524
Alignment:
| Q |
533 |
gttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgtttt |
594 |
Q |
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| T |
52091585 |
gttgttgtctactaatggagaccctacaataacgtaagattgaatgatcattttcatgtttt |
52091524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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