View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11414_low_3 (Length: 600)
Name: NF11414_low_3
Description: NF11414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11414_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 29 - 585
Target Start/End: Original strand, 38164713 - 38165284
Alignment:
| Q |
29 |
acgaaccgaggagatctgagaaaagaagtgttaagtctccctctttgaaagagggaggctaaaatctcaacaactgaattgaaatctaagtttgtgaatg |
128 |
Q |
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| T |
38164713 |
acgaaccgaggagatctgagaaaagaagtgttaagtctccctctttgaaagagggaggctaaaatctcaacaactgaattgaaatctaagtttgtgaatg |
38164812 |
T |
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| Q |
129 |
aatgaataatgtgatgatataattattattatatgtaatctaaattaagggtaattatggaggatggggcatgtgatccgcacgttgaacaaaaagacaa |
228 |
Q |
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| T |
38164813 |
aatgaataatgtgatgatataattattattatatgtaatctaaattaagggtaattatggaggatggggcatgtgatccacacgttgaacaaaaagacaa |
38164912 |
T |
|
| Q |
229 |
cctcataatagaattcaaatatacaaatacagcatacagattaaaccgcttatcgacctttcgtgtcaaacgtgtttattattacaggttgttccctgtt |
328 |
Q |
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| T |
38164913 |
cctcataatagaattcaaatatacaaatacagcatacagattaaaccgcttatcgacctttcgtgtcaaacgtgt---ttattacaggttgttccctgtt |
38165009 |
T |
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| Q |
329 |
ttttcttgtattttttcttaaacccctccaaatgnnnnnnnnnnnnnnnngctctttagtcctcttattttatagtatcttcacttaacactacaa---- |
424 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38165010 |
ttttcttgtattttttcttaaacccccccaaatg-tttttttttgtttttgctctttagtcctcttattttatagtatcttcacttaacactacaacaac |
38165108 |
T |
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| Q |
425 |
---------------caaaaatgatgatctggaagaaaaatgagaaagatcattggcacaagtgagggcgtggggtatgttttggggacgacacagttgt |
509 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38165109 |
aaaaaaatgttgttccaaacatgatgatctggaagaaaaatgagaaagatcattggcacaagtgagggcgtggggtatgttttggggacgacacagttgt |
38165208 |
T |
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| Q |
510 |
aaattggggacgacacactgtatcagaaaaacaatcccctctccgcccacaaggtctttcttattgcaatgcaagt |
585 |
Q |
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| T |
38165209 |
aaattggggacgacacactgtatcagaaaaacaatcccctctccgcccacaagatctttcttattgcaatgcaagt |
38165284 |
T |
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