View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11414_low_4 (Length: 522)
Name: NF11414_low_4
Description: NF11414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11414_low_4 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 118 - 505
Target Start/End: Original strand, 14483086 - 14483473
Alignment:
| Q |
118 |
ggtatctcatattatctatttcgaacttcaaacaaaaaagaatccaaggtagcagaagaatcacaccctgaaaatctattttcaatatggagttttgatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483086 |
ggtatctcatattatctatttcgaacttcaaacaaaaaagaatccaaggttgcagaagaatcacaccctgaaaatctattttcaatatggagttttgatt |
14483185 |
T |
|
| Q |
218 |
gaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagtgtttacaaagcagagtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483186 |
gaaaaatggtgtacgagaacattatcgaagccacaaaagattttgacaacaagcatctcattggggttggaggacatggaagtgtttacaaagcagagtt |
14483285 |
T |
|
| Q |
318 |
gcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaagctttagca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14483286 |
gcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaacctttagca |
14483385 |
T |
|
| Q |
418 |
gaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaagg |
505 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483386 |
gaaatccgacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaagg |
14483473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 14504188 - 14504704
Alignment:
| Q |
1 |
ggtaatgcctctagcctaaagccttgtccaacatccagcggaaaccataatactcataagactaacaaaaagttggtggtagttttacccatcactctag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
14504188 |
ggtaatgcatctagcctaaagccttgtccaacatccaataggaaccataatactcataagactaacaaaaaattggtggtaattttacccatcactctag |
14504287 |
T |
|
| Q |
101 |
gaannnnnnngttagca------------ggtatctcatattatctatttcgaacttcaaacaaaaaagaatccaaggtagcagaagaatcacaccctga |
188 |
Q |
| |
|
| | ||||||| || ||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14504288 |
gcatttttttgttagcattatttggttatgggatctcctattatctatttcgaacttcgaacacaaaagaatccaaggttgcagaagaatcacacactga |
14504387 |
T |
|
| Q |
189 |
aaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgga |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || ||| | |||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
14504388 |
aaatctattttcaatatggagttttgatggaaaaatggtgtatgaaaatattgtagaagccacagaagagtttgacaacaaacatctcatcggggttgga |
14504487 |
T |
|
| Q |
289 |
ggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaag |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14504488 |
ggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatttgaaag |
14504587 |
T |
|
| Q |
389 |
cttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggttta |
488 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14504588 |
cttttgcaagtgagataaaagctttaacagaaagccgacatcgaaacattgtgaagttatacgggtattgttcacatccattgcactcatttttggttta |
14504687 |
T |
|
| Q |
489 |
tgagttcttggagaagg |
505 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14504688 |
tgagttcttggagaagg |
14504704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 14468009 - 14468525
Alignment:
| Q |
1 |
ggtaatgcctctagcctaaagccttgtccaacatccagcggaaaccataatactcataagactaacaaaaagttggtggtagttttacccatcactctag |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
14468009 |
ggtaatgcttctagcctaaagccttgtccaacatccaataggaaccctaatactcataagactaacaaaaaattggtggtaattttacccatcactctag |
14468108 |
T |
|
| Q |
101 |
gaannnnnnngttagca------------ggtatctcatattatctatttcgaacttcaaacaaaaaagaatccaaggtagcagaagaatcacaccctga |
188 |
Q |
| |
|
| | ||||||| || ||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14468109 |
gcatttttttgttagcattatttggttatgggatctcctattatctatttcgaacttcgaacagaaaagaatccaaggttgcagaagaatcacacactga |
14468208 |
T |
|
| Q |
189 |
aaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgga |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || |||||| | |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14468209 |
aaatctattttcaatatggagttttgatggaaaaattgtgtatgaaaacattgttgaagccacagaagagtttgacaacaagcatctcattggggttgga |
14468308 |
T |
|
| Q |
289 |
ggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaag |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14468309 |
ggacatggaagtgtttacaaagcagagttgcctacaggtcaagttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaag |
14468408 |
T |
|
| Q |
389 |
cttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggttta |
488 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14468409 |
catttgcaagtgagatccaagctttaacagaaatccgacatcgaaacattgtgaagttatgcggttattgttcacatccattgcactcatttttggttta |
14468508 |
T |
|
| Q |
489 |
tgagttcttggagaagg |
505 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
14468509 |
tgagttcttggaaaagg |
14468525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 185 - 505
Target Start/End: Complemental strand, 14532455 - 14532135
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14532455 |
ctgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggt |
14532356 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||||||||| |||||| |
|
|
| T |
14532355 |
tggagggcatggaagtgtttacaaagcagagttgcctacaggtcaagttgttgctgtgaagaaacttcactcattacaaaatgaagaaatgtctaatctg |
14532256 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
||||| || ||| ||||||||| ||||| |||||| | |||||| || ||||||||||||||||| | ||||||||||| | | ||||||||||||| |
|
|
| T |
14532255 |
aaagcattcacaaatgagatccatgctttgaaagaaattcgacatcgcaatattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
14532156 |
T |
|
| Q |
485 |
tttatgagttcttggagaagg |
505 |
Q |
| |
|
||||||| |||||||| |||| |
|
|
| T |
14532155 |
tttatgaattcttggaaaagg |
14532135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 186 - 505
Target Start/End: Original strand, 15032855 - 15033174
Alignment:
| Q |
186 |
tgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggtt |
285 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
15032855 |
tgaaaatctgtttgaaatatggagctttgatggcaaaatggtgtacgagaacataatcgaagccactgaagattttgacgacaagcatctccttggggtt |
15032954 |
T |
|
| Q |
286 |
ggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||| | ||||||| |
|
|
| T |
15032955 |
ggaggacatggaagtgtttacaaagcagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaagaaatgcctaatctga |
15033054 |
T |
|
| Q |
386 |
aagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggt |
485 |
Q |
| |
|
||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||| | | |||||||||||||| |
|
|
| T |
15033055 |
aagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgttcacatcgactacactcatttttggt |
15033154 |
T |
|
| Q |
486 |
ttatgagttcttggagaagg |
505 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
15033155 |
ttatgaattcttggagaagg |
15033174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 186 - 505
Target Start/End: Original strand, 15002510 - 15002829
Alignment:
| Q |
186 |
tgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggtt |
285 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002510 |
tgaaaatctatttgaaatatggagctttgatggaaaaatggtgtacgagaacataatcgaagccacagaagattttgacaacaagcatctcattggggtt |
15002609 |
T |
|
| Q |
286 |
ggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctga |
385 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||||| || ||||||||||||| ||||||| | ||| || |
|
|
| T |
15002610 |
ggaggacatggaaatgtttacaaagcagaactgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatagga |
15002709 |
T |
|
| Q |
386 |
aagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggt |
485 |
Q |
| |
|
||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||||||||||||||| | ||||||||||| | | |||||||||||||| |
|
|
| T |
15002710 |
aagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggt |
15002809 |
T |
|
| Q |
486 |
ttatgagttcttggagaagg |
505 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
15002810 |
ttatgaattcttggcgaagg |
15002829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 186 - 505
Target Start/End: Original strand, 15011403 - 15011722
Alignment:
| Q |
186 |
tgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggtt |
285 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011403 |
tgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacataatcgaagccacagaagattttgacaacaagcatctcattggggtt |
15011502 |
T |
|
| Q |
286 |
ggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctga |
385 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||||| || ||||||||||||| ||||||| | |||| || |
|
|
| T |
15011503 |
ggaggacatggaaatgtttacaaagcagaactgcctacaggtcaagttgtagctgtgaagaaacttcactcattacaaaatgaagaaatgccaaatcgga |
15011602 |
T |
|
| Q |
386 |
aagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggt |
485 |
Q |
| |
|
||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||||||||||||||| | ||||||||||| | | |||||||||||||| |
|
|
| T |
15011603 |
aagctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttggt |
15011702 |
T |
|
| Q |
486 |
ttatgagttcttggagaagg |
505 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
15011703 |
ttatgaattcttggagaagg |
15011722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 186 - 505
Target Start/End: Original strand, 15017518 - 15017837
Alignment:
| Q |
186 |
tgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggtt |
285 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
15017518 |
tgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacataatcgaagccacggaagattttgacaacaaacatctcattggggtt |
15017617 |
T |
|
| Q |
286 |
ggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctga |
385 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||| |||| ||||||||||| ||||||||| ||| ||| |
|
|
| T |
15017618 |
ggaggacatgcaagtgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattacaaaatgaagaaatgtctaatatga |
15017717 |
T |
|
| Q |
386 |
aagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggt |
485 |
Q |
| |
|
||||||| ||| |||||| || ||||| ||||||| | |||||| |||||||||||||||||||||| ||||| ||||| | | |||||||||||||| |
|
|
| T |
15017718 |
aagctttcacaaatgagattcatgctttgacagaaattcgacatcgcaacattgtgaagttatacgggttttgtttacatcgactacactcatttttggt |
15017817 |
T |
|
| Q |
486 |
ttatgagttcttggagaagg |
505 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
15017818 |
ttatgaattcttggagaagg |
15017837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 186 - 505
Target Start/End: Original strand, 15037422 - 15037741
Alignment:
| Q |
186 |
tgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggtt |
285 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15037422 |
tgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacattatcgaagccactgaagattttgacaacaagcatctcattggggtt |
15037521 |
T |
|
| Q |
286 |
ggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctga |
385 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
15037522 |
ggaggacatggaaatgtttacaaagcagagttgcccacaggtcaagttgtagctgtgaagaaacttcattcattacaaaatgaggaaatgtctaatctga |
15037621 |
T |
|
| Q |
386 |
aagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggt |
485 |
Q |
| |
|
|| |||| ||| ||||||||| ||||| ||||||| | |||||| |||||||| |||||||| |||| ||||||||||| | | ||||| |||||||| |
|
|
| T |
15037622 |
aatctttcacaaatgagatccatgctttgacagaaattcgacatcgcaacattgttaagttatatgggttttgttcacatcgactacactcgtttttggt |
15037721 |
T |
|
| Q |
486 |
ttatgagttcttggagaagg |
505 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
15037722 |
ttatgaattcttggcgaagg |
15037741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 185 - 505
Target Start/End: Complemental strand, 14522334 - 14522014
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
14522334 |
ctgaaaatctatttacaatatggagctttgatggaaaaatggtgtatgagaatatcatcgaagccacagaagattttgacaacaagaatctcatcggggt |
14522235 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| ||| ||||||||| | || ||||| |
|
|
| T |
14522234 |
tggagtacatggaagtgtttacaaagcagagttgccaacaggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatcta |
14522135 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||| |||||| |||||||| |||||||| |||| ||||||||||| | | ||||||||||||| |
|
|
| T |
14522134 |
aaagcttttgcaggtgagattagtgctttgacagaaatccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttgg |
14522035 |
T |
|
| Q |
485 |
tttatgagttcttggagaagg |
505 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
14522034 |
tttatgaattcttggagaagg |
14522014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 224 - 505
Target Start/End: Original strand, 15041025 - 15041309
Alignment:
| Q |
224 |
tggtgtacgagaacattatcgaagccacagaagattttgacaacaagc---atctcattggggttggaggacatggaagtgtttacaaagcagagttgcc |
320 |
Q |
| |
|
||||||| ||||| || ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15041025 |
tggtgtatgagaatatcatcgaagccactgaagattttgacagcaagatcaatctcattggggttggagtacatggaagtgattacaaagcagagttgcc |
15041124 |
T |
|
| Q |
321 |
tacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaagctttagcagaa |
420 |
Q |
| |
|
||| || || || |||||||||||||||||||||||| ||| ||||||||| | || ||||| ||||||||||||||| |||| |||| ||||| |
|
|
| T |
15041125 |
tactggtcaagtggtagctgtgaagaaactccattcactaccaaatggagatgtatctaatctaaaagcttttgcaagttagattagtgcttagacagaa |
15041224 |
T |
|
| Q |
421 |
atccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaagg |
505 |
Q |
| |
|
|||| |||||| |||||||| |||||||| |||| ||||||||||| | | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
15041225 |
atccgacatcgcaacattgtaaagttatatgggttttgttcacatcgactacactcatttttggtttatgaattcttggagaagg |
15041309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14482191 - 14482291
Alignment:
| Q |
1 |
ggtaatgcctctagcctaaagccttgtccaacatccagcggaaaccataatactcataagactaacaaaaagttggtggtagttttacccatcactctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14482191 |
ggtaatgcctctagcctaaagccttgtccaacatccagcggaaaacataatactcataagactaacaaaaagttggtggtagttttacccatcactctag |
14482290 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
14482291 |
g |
14482291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 138 - 503
Target Start/End: Original strand, 6843 - 7208
Alignment:
| Q |
138 |
tcgaacttcaaacaaaaaagaatccaaggtagcagaagaatcacaccctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaac |
237 |
Q |
| |
|
||||||||||| || |||||||| |||| |||| ||||| || |||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
6843 |
tcgaacttcaagcacaaaagaatacaagactgcaggagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaattggtgtatgagaac |
6942 |
T |
|
| Q |
238 |
attatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtag |
337 |
Q |
| |
|
||| | ||||| || ||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
6943 |
attgttgaagcaactgaagagtttgacaacaagcatctcattgggataggaggacacggaagtgtttacaaagcagagttccccacaggacaagttgtag |
7042 |
T |
|
| Q |
338 |
ctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacat |
437 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
7043 |
cggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagctttaactgaaatccggcatcgaaacat |
7142 |
T |
|
| Q |
438 |
tgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7143 |
tgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaa |
7208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 185 - 505
Target Start/End: Original strand, 13190 - 13510
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13190 |
ctgaaaatctctttgcaacatggagctttgatggaaaaatggtatatgagaacataatcgaagccacagaagattttgacaacaagcatctcattggggt |
13289 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||||| |||| |||| || ||| ||||||||| ||| || |
|
|
| T |
13290 |
tggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattagaacatgaagaaatgtctaatatg |
13389 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
||||| || | ||||||||| ||||| ||||||| | |||||| |||||||||||||||||||| | ||||||||||| | | ||||||||||||| |
|
|
| T |
13390 |
aaagcattcaataatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
13489 |
T |
|
| Q |
485 |
tttatgagttcttggagaagg |
505 |
Q |
| |
|
||||||| || |||||||||| |
|
|
| T |
13490 |
tttatgaatttttggagaagg |
13510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 138 - 503
Target Start/End: Original strand, 7487 - 7852
Alignment:
| Q |
138 |
tcgaacttcaaacaaaaaagaatccaaggtagcagaagaatcacaccctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaac |
237 |
Q |
| |
|
||||||||||| || |||||||| |||| |||| ||||| || |||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
7487 |
tcgaacttcaagcacaaaagaatacaagactgcaggagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaattggtgtatgagaac |
7586 |
T |
|
| Q |
238 |
attatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtag |
337 |
Q |
| |
|
||| | ||||| || ||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
7587 |
attgttgaagcaactgaagagtttgacaacaagcatctcattgggataggaggacacggaagtgtttacaaagcagagttccccacaggacaagttgtag |
7686 |
T |
|
| Q |
338 |
ctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacat |
437 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
7687 |
cggtgaagaaactccattcattacaaaatggagagacgtccaatctgaaagctttcgcaagtgagatccaagctttaactgaaatccggcatcgaaacat |
7786 |
T |
|
| Q |
438 |
tgtgaagttatacgggtattgttcacatctattgcactcatttttggtttatgagttcttggagaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7787 |
tgtgaagttatacgggtattgttcacatccattgcactcatttttggtttatgagttcttggagaa |
7852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 185 - 505
Target Start/End: Original strand, 13833 - 14153
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13833 |
ctgaaaatctctttgcaacatggagctttgatggaaaaatggtatatgagaacataatcgaagccacagaagattttgacaacaagcatctcattggggt |
13932 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||||| |||| |||| || ||| ||||||||| ||| || |
|
|
| T |
13933 |
tggaggacatggaaatgtttacaaagcagagttgccttcaggtcaagttgtagctgtgaagaaacttcatttattagaacatgaagaaatgtctaatatg |
14032 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
||||| || | ||||||||| ||||| ||||||| | |||||| |||||||||||||||||||| | ||||||||||| | | ||||||||||||| |
|
|
| T |
14033 |
aaagcattcaataatgagatccatgctttgacagaaattcgacatcgcaacattgtgaagttatacggcttttgttcacatcgactacactcatttttgg |
14132 |
T |
|
| Q |
485 |
tttatgagttcttggagaagg |
505 |
Q |
| |
|
||||||| || |||||||||| |
|
|
| T |
14133 |
tttatgaatttttggagaagg |
14153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 185 - 492
Target Start/End: Original strand, 17027291 - 17027598
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||| ||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
17027291 |
ctgataatctatttgcagtatggagctttgatggaaaaatggtgtatgagaacattatcgaagccaccgaagagtttgacaacaagtatctcattggggt |
17027390 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
17027391 |
tggaggtcatggaagtgtttaccaagcagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttg |
17027490 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
17027491 |
aaagcttttgcaagtgagatcaaagctttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttag |
17027590 |
T |
|
| Q |
485 |
tttatgag |
492 |
Q |
| |
|
|||||||| |
|
|
| T |
17027591 |
tttatgag |
17027598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 185 - 492
Target Start/End: Original strand, 17557783 - 17558090
Alignment:
| Q |
185 |
ctgaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggt |
284 |
Q |
| |
|
|||| ||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
17557783 |
ctgataatctatttgcagtatggagctttgatggaaaaatggtgtatgagaacattatcgaagccaccgaagagtttgacaacaagtatctcattggggt |
17557882 |
T |
|
| Q |
285 |
tggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctg |
384 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
17557883 |
tggaggtcatggaagtgtttaccaagcagagttgcctattggacaagttgtagctgtgaagaaactccattcattacaacgtggagaaacgtccaatttg |
17557982 |
T |
|
| Q |
385 |
aaagcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcacatctattgcactcatttttgg |
484 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
17557983 |
aaagcttttgcaagtgagatcaaagctttaacagaaatccgacatagaaacattgctaagttatacgggtattgttcacatccattgcactcatttttag |
17558082 |
T |
|
| Q |
485 |
tttatgag |
492 |
Q |
| |
|
|||||||| |
|
|
| T |
17558083 |
tttatgag |
17558090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 188 - 464
Target Start/End: Complemental strand, 5275 - 4999
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| | || |
|
|
| T |
5275 |
aaaatgtatttactatatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaagcatctcattggactagg |
5176 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaa |
387 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||| || || || ||||| || |||||||||||| || ||||| |||| || |||| ||| |
|
|
| T |
5175 |
agcgcaaggaagtgtttacaaagcagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaa |
5076 |
T |
|
| Q |
388 |
gcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcaca |
464 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||| | |||| | |||||||||||| |||| || ||||||||||| |
|
|
| T |
5075 |
tgttttgcaaatgagatcaaagctttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcaca |
4999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 188 - 464
Target Start/End: Complemental strand, 14108 - 13832
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| | || |
|
|
| T |
14108 |
aaaatgtatttactatatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaagcatctcattggactagg |
14009 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaa |
387 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||| || || || ||||| || |||||||||||| || ||||| |||| || |||| ||| |
|
|
| T |
14008 |
agcgcaaggaagtgtttacaaagcagagttgccctcaggtcaagtagttgctgttaaaaaactccattcaataacaaatgcggaaaattctgatctaaaa |
13909 |
T |
|
| Q |
388 |
gcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagttatacgggtattgttcaca |
464 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||| | |||| | |||||||||||| |||| || ||||||||||| |
|
|
| T |
13908 |
tgttttgcaaatgagatcaaagctttgacagaaattcgacattgtaacattgtgaagctatatggatattgttcaca |
13832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 17817 - 17766
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacat |
239 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
17817 |
aaaatgtatttacaatatggagttttgatgggaaaatggtgtatgagaacat |
17766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 188 - 444
Target Start/End: Original strand, 17848933 - 17849189
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| | || |||||||| || || || |
|
|
| T |
17848933 |
aaaatctatttaccatatggagttttgatggaaaaatggtgtatgagagtattattgaagccacagaagattttgatgataaacatctcatcggagtagg |
17849032 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaa |
387 |
Q |
| |
|
||| || ||||||||||||||||| | |||| ||||| || || || |||||||| |||||||||||| || | ||| |||| |||| || ||| |
|
|
| T |
17849033 |
agggcagggaagtgtttacaaagccgtgttggacacaggtcaagtagtggctgtgaaaaaactccattcagtaatagatgaagaagattccagcctaaaa |
17849132 |
T |
|
| Q |
388 |
gcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaag |
444 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | |||||| |||||||||||| |
|
|
| T |
17849133 |
tctttcacaagtgagatccaagctttgatagaaattcgacatcgtaacattgtgaag |
17849189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 357
Target Start/End: Complemental strand, 15664949 - 15664780
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||||||||| | || |
|
|
| T |
15664949 |
aaaatgtatttacaatatggagttttgatgggaaaatggtgtatgagaacattattgaagcaacggaagagtttgatgacaagcatctcattggagcagg |
15664850 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattca |
357 |
Q |
| |
|
|| || |||||||||||||||||| ||||||| ||||| || || || ||||| || |||||||||||| |
|
|
| T |
15664849 |
agcgcaaggaagtgtttacaaagcaaagttgcccacaggtcaagtagttgctgttaaaaaactccattca |
15664780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 200 - 446
Target Start/End: Original strand, 14606321 - 14606567
Alignment:
| Q |
200 |
caatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
299 |
Q |
| |
|
||||||||| |||||||||||| | |||| ||||||||| | |||||||||||||||||||| | || ||||||||||| |||||||| |||||||| |
|
|
| T |
14606321 |
caatatggaactttgatggaaaatttttgtatgagaacattttggaagccacagaagattttgatgaaaaacatctcattggagttggagggcatggaag |
14606420 |
T |
|
| Q |
300 |
tgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagt |
399 |
Q |
| |
|
||| ||||||||| |||||| ||||| || || || |||||||| || ||||||||| || ||||||||||| | ||||| ||| | || ||| | |
|
|
| T |
14606421 |
tgtctacaaagcaaagttgcacacaggtcaagtagttgctgtgaaaaagctccattcagtagcaaatggagaaaatccaaatctaaaatcattcacaaat |
14606520 |
T |
|
| Q |
400 |
gagatccaagctttagcagaaatccaacatcgaaacattgtgaagtt |
446 |
Q |
| |
|
|||||||||||| | | ||||| | |||||| || ||||||||||| |
|
|
| T |
14606521 |
gagatccaagctctgaccgaaattcgacatcgtaatattgtgaagtt |
14606567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 200 - 446
Target Start/End: Original strand, 16025498 - 16025744
Alignment:
| Q |
200 |
caatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
299 |
Q |
| |
|
||||||||| |||||||||||| | |||| ||||||||| | |||||||||||||||||||| | || ||||||||||| |||||||| |||||||| |
|
|
| T |
16025498 |
caatatggaactttgatggaaaatttttgtatgagaacattttggaagccacagaagattttgatgaaaaacatctcattggagttggagggcatggaag |
16025597 |
T |
|
| Q |
300 |
tgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaaagcttttgcaagt |
399 |
Q |
| |
|
||| ||||||||| |||||| ||||| || || || |||||||| || ||||||||| || ||||||||||| | ||||| ||| | || ||| | |
|
|
| T |
16025598 |
tgtctacaaagcaaagttgcacacaggtcaagtagttgctgtgaaaaagctccattcagtagcaaatggagaaaatccaaatctaaaatcattcacaaat |
16025697 |
T |
|
| Q |
400 |
gagatccaagctttagcagaaatccaacatcgaaacattgtgaagtt |
446 |
Q |
| |
|
|||||||||||| | | ||||| | |||||| || ||||||||||| |
|
|
| T |
16025698 |
gagatccaagctctgaccgaaattcgacatcgtaatattgtgaagtt |
16025744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 188 - 314
Target Start/End: Complemental strand, 17825805 - 17825679
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||||||| ||||| ||||| |||||||||| |||||||| | || |||||||| || ||||| |
|
|
| T |
17825805 |
aaaatctatttaccatatggagttttgatgacaaaatggtgtatgagaatattattcaagccacagacgattttgatgataaacatctcatcggagttgg |
17825706 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcaga |
314 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
17825705 |
agggcatggaagtgtttacaaagcaga |
17825679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 357
Target Start/End: Complemental strand, 15676783 - 15676614
Alignment:
| Q |
188 |
aaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
287 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||| ||||| |||||||||||||||| || || |
|
|
| T |
15676783 |
aaaatgtatttacaatatggagttttgatgggaaaatggtgtatgagaacataattgaagccacataagagtttgatgacaagcatctcattggagtagg |
15676684 |
T |
|
| Q |
288 |
aggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattca |
357 |
Q |
| |
|
|| || |||| |||||||||||||| |||| | |||| || || || ||||| || ||| |||||||| |
|
|
| T |
15676683 |
agcgcaaggaaaagtttacaaagcagatttgcattcaggtcaagtagttgctgttaaaaaattccattca |
15676614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 200 - 354
Target Start/End: Original strand, 16172974 - 16173128
Alignment:
| Q |
200 |
caatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
299 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||| | ||||||||| |||||||||| |||| |||| ||||| |||||||| || ||||| |
|
|
| T |
16172974 |
caatatggaatttcgatggaaaaatggtctacgagaacatcttggaagccacacaagattttgatgacaaatatcttattggagttggagggcaaggaag |
16173073 |
T |
|
| Q |
300 |
tgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccat |
354 |
Q |
| |
|
|||||||||||||||||| | ||||| || || || |||||||| || |||||| |
|
|
| T |
16173074 |
tgtttacaaagcagagttacacacaggtcaagtagttgctgtgaaaaagctccat |
16173128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 187 - 446
Target Start/End: Original strand, 16103293 - 16103552
Alignment:
| Q |
187 |
gaaaatctattttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttgacaacaagcatctcattggggttg |
286 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||||| |||| || |||||| | |||||||||||||||||||| | || ||||| ||||| |||| |
|
|
| T |
16103293 |
gaaaatgtatttacaatatggaactttgatggaaaaattgtgtttgaaaacattgtggaagccacagaagattttgatgagaaacatctaattggtgttg |
16103392 |
T |
|
| Q |
287 |
gaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaaactccattcattacaaaatggagaaatgtccaatctgaa |
386 |
Q |
| |
|
| || ||||||||||| ||||||||| |||||| || || || || || |||||||| || ||||||||| | |||||| |||| ||||||| || |
|
|
| T |
16103393 |
gggggcatggaagtgtctacaaagcaaagttgcacacgggccaagtagttgctgtgaaaaagctccattcagtggcaaatggtgaaaatcccaatctaaa |
16103492 |
T |
|
| Q |
387 |
agcttttgcaagtgagatccaagctttagcagaaatccaacatcgaaacattgtgaagtt |
446 |
Q |
| |
|
| |||| ||| ||| ||||||||| || | ||||| |||||| || ||||||||||| |
|
|
| T |
16103493 |
atctttcacaaatgaaatccaagctctaaccgaaattagacatcgtaatattgtgaagtt |
16103552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 31103114 - 31103189
Alignment:
| Q |
272 |
atctcattggggttggaggacatggaagtgtttacaaagcagagttgcctacaggacaggttgtagctgtgaagaa |
347 |
Q |
| |
|
|||||||||| |||||| | || |||| ||||||||| |||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
31103114 |
atctcattggagttggaagtcaaggaaatgtttacaaggcagagttgcctacaggattggttgttgctgtgaagaa |
31103189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 37027180 - 37027247
Alignment:
| Q |
196 |
ttttcaatatggagttttgatggaaaaatggtgtacgagaacattatcgaagccacagaagattttga |
263 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || || || || || ||||||||||| |||||||| |
|
|
| T |
37027180 |
ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttga |
37027247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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