View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11415_high_1 (Length: 549)

Name: NF11415_high_1
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11415_high_1
NF11415_high_1
[»] chr2 (13 HSPs)
chr2 (17-319)||(17245114-17245416)
chr2 (316-542)||(17244516-17244743)
chr2 (273-319)||(22963398-22963444)
chr2 (273-319)||(22998033-22998079)
chr2 (273-315)||(19313850-19313892)
chr2 (273-315)||(33902066-33902108)
chr2 (274-315)||(41465508-41465549)
chr2 (275-319)||(4264236-4264280)
chr2 (276-315)||(13711465-13711504)
chr2 (277-315)||(36641988-36642026)
chr2 (275-312)||(39788588-39788625)
chr2 (275-315)||(11366544-11366584)
chr2 (275-319)||(34441925-34441969)
[»] chr4 (18 HSPs)
chr4 (450-541)||(52451917-52452008)
chr4 (161-233)||(52451509-52451581)
chr4 (272-315)||(28003157-28003200)
chr4 (275-315)||(17272011-17272051)
chr4 (275-315)||(29584369-29584409)
chr4 (275-315)||(32912751-32912791)
chr4 (275-315)||(34361662-34361702)
chr4 (275-315)||(38812268-38812308)
chr4 (275-310)||(37663915-37663950)
chr4 (276-315)||(51204580-51204619)
chr4 (273-312)||(55241278-55241317)
chr4 (277-315)||(20097499-20097537)
chr4 (277-315)||(27396618-27396656)
chr4 (273-315)||(38811811-38811853)
chr4 (273-315)||(39397916-39397958)
chr4 (275-319)||(7152273-7152317)
chr4 (275-315)||(35021206-35021246)
chr4 (275-315)||(38011854-38011894)
[»] chr6 (9 HSPs)
chr6 (275-315)||(19631749-19631789)
chr6 (275-315)||(8513233-8513273)
chr6 (276-315)||(20768087-20768126)
chr6 (277-315)||(30353502-30353540)
chr6 (278-315)||(25440961-25440998)
chr6 (275-315)||(3880083-3880123)
chr6 (275-315)||(4318967-4319007)
chr6 (275-315)||(5627391-5627431)
chr6 (275-319)||(11084156-11084200)
[»] chr7 (13 HSPs)
chr7 (272-318)||(10359357-10359403)
chr7 (272-312)||(5657630-5657670)
chr7 (275-315)||(26524473-26524513)
chr7 (273-312)||(8861258-8861297)
chr7 (276-315)||(24211717-24211756)
chr7 (275-310)||(30055501-30055536)
chr7 (274-312)||(6546493-6546531)
chr7 (273-315)||(23402379-23402421)
chr7 (274-315)||(12165726-12165767)
chr7 (274-315)||(37109846-37109887)
chr7 (275-315)||(17842732-17842772)
chr7 (275-315)||(18797304-18797344)
chr7 (275-319)||(41765220-41765264)
[»] chr5 (9 HSPs)
chr5 (277-319)||(25501057-25501099)
chr5 (275-315)||(8742022-8742062)
chr5 (275-315)||(27330306-27330346)
chr5 (273-315)||(14409461-14409503)
chr5 (274-315)||(7693229-7693270)
chr5 (275-312)||(39572819-39572856)
chr5 (275-315)||(19119859-19119899)
chr5 (275-315)||(22616494-22616534)
chr5 (275-315)||(25513771-25513811)
[»] chr1 (8 HSPs)
chr1 (273-319)||(3309142-3309188)
chr1 (274-315)||(38823209-38823250)
chr1 (275-315)||(1547283-1547323)
chr1 (274-312)||(43579241-43579279)
chr1 (275-315)||(4150495-4150535)
chr1 (275-315)||(16415641-16415681)
chr1 (275-315)||(18422647-18422687)
chr1 (275-315)||(37619036-37619076)
[»] chr8 (10 HSPs)
chr8 (274-315)||(15009240-15009281)
chr8 (275-315)||(1150256-1150296)
chr8 (275-315)||(7998362-7998402)
chr8 (275-313)||(39099262-39099300)
chr8 (274-315)||(13307621-13307662)
chr8 (275-315)||(1835397-1835437)
chr8 (275-315)||(1879238-1879278)
chr8 (274-310)||(5300102-5300138)
chr8 (275-319)||(16447022-16447066)
chr8 (275-315)||(27082989-27083029)
[»] chr3 (12 HSPs)
chr3 (273-313)||(4015449-4015489)
chr3 (275-315)||(40640642-40640682)
chr3 (273-313)||(42204340-42204380)
chr3 (275-319)||(45879502-45879546)
chr3 (275-313)||(11466815-11466853)
chr3 (274-315)||(51213126-51213167)
chr3 (275-315)||(21193597-21193637)
chr3 (275-315)||(22450959-22450999)
chr3 (275-315)||(26941405-26941445)
chr3 (275-315)||(35844317-35844357)
chr3 (275-315)||(46994795-46994835)
chr3 (273-313)||(53811986-53812026)
[»] scaffold0061 (1 HSPs)
scaffold0061 (277-315)||(43959-43997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (277-315)||(154790-154828)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 17245416 - 17245114
Alignment:
Q  17 acatagatgatgccatattgagttactagggatgttatccttggttgatcagaaggtggataaaaggaaagaatcaatggtggcttgttcaatagaagca 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17245416 acataggtgatgccatattgagttactagggatgttatccttggatgatcagaaggtggataaaaggaaagaatcaatggtggcttgttcaatagaagca 17245317  T
Q  117 tgccttcaacataatctgctccattggagtcatttcttctattgaatgagattaaatgttcttgatctgtggaaaatgcagaaaagtcgttgtaaattag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17245316 tgccttcaacataatctgctccattggagtcatttcttctatcaaatgagattaaatgttcttgatctgtggaaaatgcggaaaagtcgttgtaaattag 17245217  T
Q  217 acgcaaccactttacctgcaaacaatcaaacaaagatacgttgagcttatttatggatggaaaattctatggtgaagtcgtaagaatgacttttctggta 316  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17245216 acgcaaccactttacctgcaaacaatcaaacaaagatctgttgagcttatttatggatggaaaattctatggtgaagtcgcgagaatgacttttctggta 17245117  T
Q  317 aag 319  Q
    |||    
T  17245116 aag 17245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 316 - 542
Target Start/End: Complemental strand, 17244743 - 17244516
Alignment:
Q  316 aaaggttattattgaaccgcaactttgataaggaattcatgtcacggagnnnnnnnn-ctttctcaattgattattgatagttttaaacatacatatgtg 414  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||    
T  17244743 aaaggttattattgaaccgcaactttcataaggaattcatgtcacggagattttttttctttcacaattgattattgatagttttaaacatacatatgtg 17244644  T
Q  415 tgaatgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 514  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17244643 tgaacgaaaaagagatgataatacttgccctagttggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaac 17244544  T
Q  515 ggcataaaacacctctgagttcttctct 542  Q
    ||||||||| ||||||||||||||||||    
T  17244543 ggcataaaatacctctgagttcttctct 17244516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 22963398 - 22963444
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22963398 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22963444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 22998079 - 22998033
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22998079 atggaaaattttatggtgaagtcataagaatgacttttctggtaaag 22998033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 19313850 - 19313892
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  19313850 atggaaaattctatggtgaagtcattagaatgacttttctggt 19313892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 33902066 - 33902108
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  33902066 atggaaaattctatgatgaagtcgttagaatgacttttctggt 33902108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 41465508 - 41465549
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  41465508 tggaaaattctatggtgaagtcatgagaatgacttttctggt 41465549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 4264280 - 4264236
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||||| | | |||||||||||||||||||    
T  4264280 ggaaaattctatggtgaagtcatcataatgacttttctggtaaag 4264236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 13711465 - 13711504
Alignment:
Q  276 gaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggt 13711504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 36641988 - 36642026
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggt 36642026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 39788625 - 39788588
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  39788625 ggaaaattttatggtgaagtcataagaatgacttttct 39788588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 11366584 - 11366544
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  11366584 ggaaaattctatggtgaaatcataagaatgacttttttggt 11366544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 34441969 - 34441925
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||||| | | |||||||||| ||||||||    
T  34441969 ggaaaattctatggtgaagtcatgaaaatgacttttttggtaaag 34441925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 541
Target Start/End: Original strand, 52451917 - 52452008
Alignment:
Q  450 ggtgcaggtccaagaagtattcttgctctggttatcactccaaattgacctagtcctccaagaacggcataaaacacctctgagttcttctc 541  Q
    |||||||||||||||  ||||||||||| |||||| |  |||||||| ||||| ||||||||||| |||||||| |  ||||||||||||||    
T  52451917 ggtgcaggtccaagagctattcttgctcgggttataatcccaaattggcctagacctccaagaaccgcataaaataattctgagttcttctc 52452008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 52451509 - 52451581
Alignment:
Q  161 aatgagattaaatgttcttgatctgtggaaaatgcagaaaagtcgttgtaaattagacgcaaccactttacct 233  Q
    |||||||||||||||||||| |||   ||||||||||| ||||||||||||| || ||| | |||||||||||    
T  52451509 aatgagattaaatgttcttggtctccagaaaatgcagagaagtcgttgtaaagtaaacggagccactttacct 52451581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 28003200 - 28003157
Alignment:
Q  272 gatggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  28003200 gatggaaaattctatggtgaagtcatgagaatgacttttctggt 28003157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 17272011 - 17272051
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  17272011 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 17272051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 29584409 - 29584369
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  29584409 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 29584369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 32912791 - 32912751
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  32912791 ggaaaattctatggtgaagtcataagaatgacttttttggt 32912751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 34361702 - 34361662
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  34361702 ggaaaattctatggtgaagtcataagaatgacttttttggt 34361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 38812308 - 38812268
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  38812308 ggaaaattctatggtgaagtcatgagaatgacttttctggt 38812268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 37663950 - 37663915
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgactttt 310  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37663950 ggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 51204580 - 51204619
Alignment:
Q  276 gaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggt 51204619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 55241317 - 55241278
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  55241317 atggaaaattctatggtgaagtcatgagaatgacttttct 55241278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 20097537 - 20097499
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggt 20097499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 27396618 - 27396656
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggt 27396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 38811811 - 38811853
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  38811811 atggaaaattctatggtgaagtcatgagaatgatttttctggt 38811853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 39397916 - 39397958
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||||| | |||||||||||| ||||    
T  39397916 atggaaaattctatggtgaagtcattagaatgacttttatggt 39397958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 7152317 - 7152273
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||||| |   |||||||||||||||||||    
T  7152317 ggaaaattctatggtgaagtcatgctaatgacttttctggtaaag 7152273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 35021246 - 35021206
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  35021246 ggaaaattctatggtgaagtcatgaaaatgacttttctggt 35021206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 38011854 - 38011894
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  38011854 ggaaaattctatggtgaaatcatgagaatgacttttctggt 38011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 19631749 - 19631789
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19631749 ggaaaattctatggtgaagtcataagaatgacttttctggt 19631789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 8513233 - 8513273
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8513233 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8513273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 20768087 - 20768126
Alignment:
Q  276 gaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggt 20768126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 30353540 - 30353502
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggt 30353502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 25440961 - 25440998
Alignment:
Q  278 aaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| | |||||||||||||||    
T  25440961 aaattctatggtgaagtcgttaaaatgacttttctggt 25440998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 3880123 - 3880083
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  3880123 ggaaaattctatggtgaagtcacgagaatgacttttctggt 3880083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 4319007 - 4318967
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  4319007 ggaaaattctatggtgaagtcatgagaatgacttttttggt 4318967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 5627391 - 5627431
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  5627391 ggaaaattctaaggtgaagtcataagaatgacttttttggt 5627431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 11084200 - 11084156
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||||| | | ||| |||||||||||||||    
T  11084200 ggaaaattctatggtgaagtcatgaaaataacttttctggtaaag 11084156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 10359403 - 10359357
Alignment:
Q  272 gatggaaaattctatggtgaagtcgtaagaatgacttttctggtaaa 318  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||    
T  10359403 gatggaaaattctatggtgaagtcatgataatgacttttctggtaaa 10359357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 5657670 - 5657630
Alignment:
Q  272 gatggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  5657670 gatggaaaattctatggtgaagtcatgagaatgacttttct 5657630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 26524513 - 26524473
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  26524513 ggaaaattctatggtgaagtcatgagaatgacttttctggt 26524473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 8861258 - 8861297
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  8861258 atggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 24211717 - 24211756
Alignment:
Q  276 gaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggt 24211756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 30055501 - 30055536
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgactttt 310  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30055501 ggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 6546493 - 6546531
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  6546493 tggaaaattctatggtgaagtcataagaatgatttttct 6546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 23402421 - 23402379
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  23402421 atggaaaattctatggcgaagtcatgagaatgacttttctggt 23402379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 12165726 - 12165767
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  12165726 tggaaaattctacggtgaagtcgttaaaatgacttttctggt 12165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 37109846 - 37109887
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| ||| |||||||||| ||||    
T  37109846 tggaaaattctatggtgaagtcataaaaatgacttttttggt 37109887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 17842772 - 17842732
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  17842772 ggaaaattctatggtgaagtcataaaaatgacttttttggt 17842732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 18797304 - 18797344
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  18797304 ggaaaattctatggtgaagtcatgagaatgacttttttggt 18797344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 41765264 - 41765220
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||| ||||||||||| | ||||||||||||||| |||||    
T  41765264 ggaaaattccatggtgaagtcatgagaatgacttttctgataaag 41765220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 25501099 - 25501057
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  25501099 aaaattctatggtgaagtcatgagaatgacttttctggtaaag 25501057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 8742062 - 8742022
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  8742062 ggaaaattctatggtgaagtcatgagaatgacttttctggt 8742022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 27330306 - 27330346
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  27330306 ggaaaattctatggtgaagtcgtgggaatgacttttctggt 27330346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 14409503 - 14409461
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  14409503 atggaaaattctatggtgaagtcatgagaatgatttttctggt 14409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 7693229 - 7693270
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  7693229 tggaaaattctatggtgaagtcattaaaatgacttttctggt 7693270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 39572819 - 39572856
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  39572819 ggaaaattctatggtgaagtcatgagaatgacttttct 39572856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 19119859 - 19119899
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  19119859 ggaaaattctatggtgaagtcatgagaatgacttttgtggt 19119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 22616494 - 22616534
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  22616494 ggaaaattctatggtgaagtcatgaaaatgacttttctggt 22616534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 25513771 - 25513811
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  25513771 ggaaaattctatggtgaagtcgttaaaatgatttttctggt 25513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 3309142 - 3309188
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  3309142 atggaaaattctatggtaaagtcatgagaatgacttttctggtaaag 3309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 38823209 - 38823250
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38823209 tggaaaattctatggtgaagtcatgagaatgacttttctggt 38823250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 1547283 - 1547323
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  1547283 ggaaaattctatggtgaagtcatgagaatgacttttctggt 1547323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 43579241 - 43579279
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttct 312  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  43579241 tggaaaattctatggtgaagtcatgagaatgacttttct 43579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 4150535 - 4150495
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  4150535 ggaaaattctatggtgaagtcatgataatgacttttctggt 4150495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 16415641 - 16415681
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  16415641 ggaaaattctaaggtgaagtcatgagaatgacttttctggt 16415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 18422647 - 18422687
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| ||| |||||||||| ||||    
T  18422647 ggaaaattctatggtgaagtcataaaaatgacttttttggt 18422687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 37619076 - 37619036
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||  |||||||||||||| ||||    
T  37619076 ggaaaattctatggtgaagttataagaatgacttttttggt 37619036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 15009240 - 15009281
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15009240 tggaaaattctatggtgaagtcataagaatgacttttttggt 15009281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 1150296 - 1150256
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  1150296 ggaaaattctatggtgaagtcataagaatgacttttttggt 1150256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 7998362 - 7998402
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  7998362 ggaaaattctatggtgaagtcatgagaatgacttttctggt 7998402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 39099300 - 39099262
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctg 313  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39099300 ggaaaattctatggtgaagtcatgagaatgacttttctg 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 13307621 - 13307662
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| | ||||||| |||||||||    
T  13307621 tggaaaattctatggtgaagtcatgagaatgatttttctggt 13307662  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 1835437 - 1835397
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  1835437 ggaaaattctatggtgaagttgttagaatgacttttttggt 1835397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 1879278 - 1879238
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  1879278 ggaaaattctatggtgaagttgttagaatgacttttttggt 1879238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 5300138 - 5300102
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgactttt 310  Q
    |||||||||||||||||||||| | ||||||||||||    
T  5300138 tggaaaattctatggtgaagtcatgagaatgactttt 5300102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 16447066 - 16447022
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||||||||||| | | ||||||||||||| |||||    
T  16447066 ggaaaattctatggtgaagtcatgaaaatgacttttctgataaag 16447022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 27083029 - 27082989
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | ||| |||||||||||||    
T  27083029 ggaaaattctatggtgaagtcatcagactgacttttctggt 27082989  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 4015449 - 4015489
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctg 313  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  4015449 atggaaaattctatggtgaagtcatgagaatgacttttctg 4015489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 40640682 - 40640642
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  40640682 ggaaaattctatggtgaagtcatgagaatgacttttctggt 40640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 42204340 - 42204380
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctg 313  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  42204340 atggaaaattctatcgtgaagtcgtgagaatgacttttctg 42204380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 45879546 - 45879502
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggtaaag 319  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||    
T  45879546 ggaaaattctatgctgaagtcatgagaatgacttttctggtaaag 45879502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 11466815 - 11466853
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctg 313  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  11466815 ggaaaattctatggtgaagtcttgagaatgacttttctg 11466853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 51213167 - 51213126
Alignment:
Q  274 tggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||| | |||||||||||| ||||    
T  51213167 tggaaaattctatggtgaagtcatgagaatgacttttttggt 51213126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 21193597 - 21193637
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  21193597 ggaaaattctatggtaaagtcatgagaatgacttttctggt 21193637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 22450959 - 22450999
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | ||||||| |||||||||    
T  22450959 ggaaaattctatggtgaagtcatgagaatgatttttctggt 22450999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 26941445 - 26941405
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  26941445 ggaaaattctatggtgaagtcataagaatgatttttttggt 26941405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 35844317 - 35844357
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  35844317 ggaaaattctatggtgaagtcatgataatgacttttctggt 35844357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 46994835 - 46994795
Alignment:
Q  275 ggaaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    ||||||||||| ||||||||||||||||||| |||| ||||    
T  46994835 ggaaaattctacggtgaagtcgtaagaatgatttttttggt 46994795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 53812026 - 53811986
Alignment:
Q  273 atggaaaattctatggtgaagtcgtaagaatgacttttctg 313  Q
    ||||||||||||| ||||||||| | |||||||||||||||    
T  53812026 atggaaaattctacggtgaagtcatgagaatgacttttctg 53811986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 43959 - 43997
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  43959 aaaattctatggtgaagtcgtaagaaagacttttttggt 43997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 154828 - 154790
Alignment:
Q  277 aaaattctatggtgaagtcgtaagaatgacttttctggt 315  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  154828 aaaattctatggtgaagtcgtaagaaagacttttttggt 154790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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