View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11415_high_2 (Length: 383)
Name: NF11415_high_2
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11415_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 30473987 - 30474305
Alignment:
| Q |
46 |
agatgcatatgtatgtgcgtgtgagagaatggtatatctcctcatataacgattaatggtcagtttattagtcactaaattcatcatatatttttgaagg |
145 |
Q |
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| T |
30473987 |
agatgcatatgtatgtgcgtgtgagaaaatggtatatctcctcatataatgattaatagtcagtttattagtcattaaattcatcatatatttttgaagg |
30474086 |
T |
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| Q |
146 |
actaaattcattatttaatttctttgnnnnnnnncacttcattatttaatcatattaattttatagcattccctgtttgattcaaaaagtaatgttaaat |
245 |
Q |
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| T |
30474087 |
actaaactcattatttaatttctttgaaaaaaa-cacttcattatttaatcatattaattttatagcattccctgtttgattcaaaaagtaatgttaaat |
30474185 |
T |
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| Q |
246 |
tagaatgtagttagttaactttatgaataatttacactaaaaaatgtgctaattttaaattataataatagcaaatagattatatagaaaatagtttaat |
345 |
Q |
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| T |
30474186 |
tagaatgtagttagttaactttatgaaaaatttacactaaaaaatgtgctaatttttaattataataatagaaaatagattatatagaa--------aat |
30474277 |
T |
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| Q |
346 |
aattggtatgcattgctagtatattctt |
373 |
Q |
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| T |
30474278 |
aattggtatgcattgctagtatattctt |
30474305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 30471980 - 30472103
Alignment:
| Q |
38 |
gagagagcagatgcatatgtatgtgcgtgtgagagaatggtatatctcctcatataacgattaatggtcagtttattagtcactaaattcatcata-tat |
136 |
Q |
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| T |
30471980 |
gagagagtagatgcatatgtatgtgcgtgtgagagaatggtatacctccttatatatcga-----------tttattagtcgctaaattcattatattgt |
30472068 |
T |
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| Q |
137 |
ttttgaaggactaaattcattatttaatttctttg |
171 |
Q |
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| T |
30472069 |
ttttgaaggactaaattcattatttaatttctttg |
30472103 |
T |
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