View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11415_high_3 (Length: 326)

Name: NF11415_high_3
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11415_high_3
NF11415_high_3
[»] chr5 (15 HSPs)
chr5 (137-310)||(12279902-12280076)
chr5 (1-137)||(31193964-31194100)
chr5 (1-136)||(14076834-14076970)
chr5 (1-137)||(36955460-36955596)
chr5 (26-137)||(17370066-17370177)
chr5 (26-136)||(31194156-31194266)
chr5 (1-100)||(42546385-42546484)
chr5 (26-136)||(8754658-8754768)
chr5 (5-58)||(32346975-32347028)
chr5 (1-57)||(39634882-39634938)
chr5 (68-136)||(36955303-36955371)
chr5 (1-42)||(304177-304218)
chr5 (26-136)||(32347088-32347198)
chr5 (1-35)||(17370233-17370267)
chr5 (66-110)||(43449493-43449537)
[»] chr2 (24 HSPs)
chr2 (1-137)||(22563209-22563345)
chr2 (1-137)||(21265728-21265864)
chr2 (26-136)||(22563401-22563511)
chr2 (26-136)||(17200078-17200188)
chr2 (26-137)||(29892990-29893099)
chr2 (1-113)||(156971-157082)
chr2 (26-137)||(12232562-12232672)
chr2 (1-136)||(34645547-34645681)
chr2 (1-113)||(17200244-17200356)
chr2 (66-136)||(4371454-4371524)
chr2 (1-99)||(12232728-12232826)
chr2 (26-136)||(21265563-21265672)
chr2 (26-137)||(20296607-20296718)
chr2 (1-128)||(20296270-20296397)
chr2 (26-136)||(34645737-34645847)
chr2 (1-58)||(13979710-13979767)
chr2 (1-94)||(8237886-8237978)
chr2 (1-116)||(29892820-29892934)
chr2 (66-108)||(32222055-32222097)
chr2 (83-120)||(33491416-33491453)
chr2 (67-135)||(4682757-4682825)
chr2 (28-136)||(38418479-38418588)
chr2 (99-136)||(33491329-33491366)
chr2 (99-136)||(33491448-33491485)
[»] chr3 (20 HSPs)
chr3 (1-135)||(4041349-4041483)
chr3 (1-136)||(38499819-38499953)
chr3 (1-136)||(53196988-53197123)
chr3 (1-108)||(8799482-8799589)
chr3 (1-108)||(46883578-46883685)
chr3 (1-119)||(29828847-29828965)
chr3 (1-129)||(43797518-43797646)
chr3 (28-137)||(8799316-8799425)
chr3 (1-130)||(25349876-25350005)
chr3 (26-127)||(43797361-43797462)
chr3 (26-136)||(38500013-38500122)
chr3 (66-131)||(53197214-53197279)
chr3 (99-136)||(29828685-29828722)
chr3 (25-136)||(48346168-48346280)
chr3 (1-137)||(43797651-43797778)
chr3 (26-136)||(46883424-46883525)
chr3 (29-135)||(43797836-43797941)
chr3 (7-58)||(48346072-48346123)
chr3 (99-136)||(20383290-20383327)
chr3 (26-58)||(4041261-4041293)
[»] chr7 (17 HSPs)
chr7 (1-137)||(19318313-19318450)
chr7 (1-137)||(35363317-35363453)
chr7 (1-136)||(35207344-35207476)
chr7 (26-136)||(35207178-35207288)
chr7 (1-108)||(48006290-48006397)
chr7 (17-136)||(25048205-25048325)
chr7 (1-131)||(6408420-6408551)
chr7 (68-137)||(19318452-19318521)
chr7 (1-136)||(2834367-2834500)
chr7 (1-137)||(26903431-26903563)
chr7 (68-128)||(39983870-39983930)
chr7 (26-130)||(29474604-29474707)
chr7 (99-135)||(2830833-2830869)
chr7 (1-37)||(29474512-29474548)
chr7 (7-49)||(46409617-46409659)
chr7 (84-128)||(6408261-6408305)
chr7 (26-58)||(48006202-48006234)
[»] chr8 (19 HSPs)
chr8 (1-136)||(14999171-14999306)
chr8 (1-137)||(43801637-43801773)
chr8 (1-136)||(41721993-41722128)
chr8 (1-107)||(6911195-6911301)
chr8 (1-136)||(16325010-16325147)
chr8 (1-136)||(41403925-41404061)
chr8 (26-136)||(6911029-6911139)
chr8 (26-137)||(16324843-16324954)
chr8 (1-58)||(40621693-40621750)
chr8 (26-135)||(41403760-41403869)
chr8 (66-137)||(15009089-15009160)
chr8 (26-137)||(8489372-8489483)
chr8 (66-137)||(43801469-43801540)
chr8 (8-108)||(22781226-22781325)
chr8 (1-44)||(8489539-8489582)
chr8 (26-128)||(22781063-22781165)
chr8 (79-137)||(14999419-14999477)
chr8 (99-137)||(40621643-40621681)
chr8 (96-137)||(6911299-6911340)
[»] chr1 (22 HSPs)
chr1 (1-136)||(24883135-24883269)
chr1 (1-136)||(3385477-3385612)
chr1 (1-135)||(27171800-27171934)
chr1 (26-134)||(34969987-34970095)
chr1 (1-128)||(33156621-33156747)
chr1 (1-136)||(49776819-49776953)
chr1 (1-135)||(33401023-33401156)
chr1 (1-127)||(37948797-37948923)
chr1 (1-138)||(13946929-13947057)
chr1 (26-129)||(49777014-49777117)
chr1 (3-94)||(43297019-43297110)
chr1 (1-106)||(34970151-34970256)
chr1 (1-52)||(39781148-39781199)
chr1 (1-52)||(42082897-42082948)
chr1 (66-136)||(24882971-24883041)
chr1 (66-137)||(3385307-3385378)
chr1 (66-137)||(34622556-34622627)
chr1 (1-58)||(38338833-38338890)
chr1 (66-134)||(33400857-33400925)
chr1 (99-136)||(27172054-27172091)
chr1 (71-136)||(33156456-33156520)
chr1 (26-58)||(38338745-38338777)
[»] chr4 (27 HSPs)
chr4 (1-136)||(11789859-11789994)
chr4 (1-134)||(5465855-5465988)
chr4 (1-139)||(23655233-23655372)
chr4 (28-141)||(50544251-50544364)
chr4 (1-137)||(46993235-46993371)
chr4 (1-108)||(19037750-19037857)
chr4 (1-94)||(9551266-9551359)
chr4 (8-137)||(24673894-24674023)
chr4 (28-136)||(9551418-9551526)
chr4 (1-136)||(17914916-17915049)
chr4 (27-131)||(46993072-46993176)
chr4 (66-137)||(54316060-54316131)
chr4 (29-136)||(7061972-7062079)
chr4 (36-120)||(42475892-42475976)
chr4 (26-109)||(11790053-11790136)
chr4 (5-94)||(3556534-3556624)
chr4 (1-58)||(26297479-26297536)
chr4 (1-52)||(1024990-1025041)
chr4 (9-58)||(21785786-21785835)
chr4 (28-120)||(21785891-21785983)
chr4 (29-136)||(3556366-3556473)
chr4 (66-104)||(19037951-19037989)
chr4 (66-136)||(32160311-32160381)
chr4 (68-129)||(8538360-8538421)
chr4 (99-136)||(26297323-26297360)
chr4 (89-142)||(35256136-35256189)
chr4 (1-37)||(32591247-32591283)
[»] chr6 (7 HSPs)
chr6 (1-136)||(16125522-16125657)
chr6 (1-136)||(22748754-22748889)
chr6 (26-136)||(22748588-22748698)
chr6 (26-137)||(16125713-16125824)
chr6 (1-94)||(24565270-24565361)
chr6 (1-49)||(11014408-11014456)
chr6 (26-136)||(6705213-6705323)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 137 - 310
Target Start/End: Complemental strand, 12280076 - 12279902
Alignment:
Q  137 agtgtgctgcgttgatgttacaggaatgttggtattttt-cttgtataggatctgcctttgtaggtgtgtttgtagtgacaattgaattgatggagcatt 235  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12280076 agtgtgctgcgttgatgttacaggaatgttggtattttttcttgtataggatctgcctttgtaggtgtgtttgtggtgacaattgaattgatggagcatt 12279977  T
Q  236 aggttgtggagcttaattatacattgtttgagtatgaagttctctttggtttcatatagggttgatatccatcat 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12279976 aggttgtggagcttaattatactttgtttgagtatgaagttctctttggtttcatatagggttgatatccatcat 12279902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31194100 - 31193964
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||       ||||||||||||||||| ||| | ||||| |||||    
T  31194100 tatgtatttttattaaacaaatatttagtttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagta 31194001  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31194000 aatggagcttagcctaaatggagcatacccgaactca 31193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14076834 - 14076970
Alignment:
Q  1 tatgtatttttattaaacaaa-tatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagt 99  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| | |||       ||||||||||||||||| ||| ||||||| ||||    
T  14076834 tatgtatttttattaaaaaaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagt 14076933  T
Q  100 aaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||| || ||||||||||||| |||||| ||||||||    
T  14076934 aaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 36955460 - 36955596
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||  | |||| ||||||||||||||||||| ||||||| |||||       ||||||||||||||| | ||| |||||||||||||    
T  36955460 tatgtatttttattaatgagatatttgttttttaatttaaaatcgcaaccgttagatatttttttgccacatgtcttgcaaccaaaccctaaatagagta 36955559  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||| |||||||||||||||| ||| ||||| ||||||    
T  36955560 aatagagcttagcctaaatggagcgtacccaaactca 36955596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 17370177 - 17370066
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| ||||||| |||||||||||| ||||| |||||| ||||    
T  17370177 tgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagca 17370078  T
Q  126 tacccgaactca 137  Q
    ||||||||||||    
T  17370077 tacccgaactca 17370066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 31194156 - 31194266
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||||||  ||||       ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||    
T  31194156 tgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagca 31194255  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  31194256 tacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42546484 - 42546385
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       |||| |||||||||||| ||| ||||||| |||||    
T  42546484 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 8754768 - 8754658
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||| |||||||| ||||        |||||||||||| |||| ||| |||||||||||||||||||| |||| ||||||| || |    
T  8754768 tgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggagga 8754669  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  8754668 tacccgaactc 8754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 32347028 - 32346975
Alignment:
Q  5 tatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32347028 tatttttattaaacaaatatttgttttttaatttaaaatctcaaccgtaagata 32346975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39634938 - 39634882
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagat 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  39634938 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagat 39634882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 36955371 - 36955303
Alignment:
Q  68 cacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||| ||| |||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 304177 - 304218
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaa 42  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  304177 tatgtatttttattaaataaatatttgttttttaatttaaaa 304218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 32347088 - 32347198
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||| |||| ||| || |||||       | |||||||||| |||| ||| | ||||| |||||| |||||||||||||||||| ||||    
T  32347088 tgttttttaatttaagatctaaacagttagatatttttttgtcacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagca 32347187  T
Q  126 tacccgaactc 136  Q
    || | ||||||    
T  32347188 tatctgaactc 32347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17370233 - 17370267
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17370233 tatgtatttttattaaacaaatatttgttttttaa 17370267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 43449537 - 43449493
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagctt 110  Q
    ||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  43449537 gccacatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22563345 - 22563209
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||       ||||||||||||||||| ||| ||||||| |||||    
T  22563345 tatgtagttttattaaacaaatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagta 22563246  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22563245 aatggagcttagcctaaatggagcatacccgaactca 22563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21265728 - 21265864
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||       ||||||||||||||||| ||| |||||||||||||    
T  21265728 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccattagatacttttttgccacatgtcttgcatccaaaccctaaatagagta 21265827  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||||||| |||||  ||||||| ||||||||    
T  21265828 aatggagcttagcttaaatagagcatactcgaactca 21265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 22563401 - 22563511
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  22563401 tgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagca 22563500  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  22563501 tacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 17200188 - 17200078
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||| | |||||       |||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||| ||||    
T  17200188 tgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagca 17200089  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  17200088 tacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 29892990 - 29893099
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       | ||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||||    
T  29892990 tgttttttaatttaaaatctcaaccgttagatattttt--gtcacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagca 29893087  T
Q  126 tacccgaactca 137  Q
    ||||||||||||    
T  29893088 tacccgaactca 29893099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 157082 - 156971
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||       |||| ||||||| |||| ||||||||||| |||||    
T  157082 tatgtatttttattaaacaaatatttgttttttaatttcaaatctcaaccgttagatatttttctgcca-atgtcttacatccaaatcctaaatggagta 156984  T
Q  101 aatggagcttagc 113  Q
    |||||||||||||    
T  156983 aatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 12232672 - 12232562
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  12232672 tgttttttaatttaaaatctcaaccgttagatatttttt-gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagca 12232574  T
Q  126 tacccgaactca 137  Q
    || || ||||||    
T  12232573 tatccaaactca 12232562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 34645681 - 34645547
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||       ||||||||||||||||| | | ||||||| |||||    
T  34645681 tatgtatttttattaaataaatatttgttttttaatttaaaatctcaatcgttagata-ttttttgccacatgtcttgcatccataccctaaatggagta 34645583  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||| || |||| |||||||  |||||||||||||||    
T  34645582 aatagaacttaacctaaatagagcatacccgaactc 34645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17200244 - 17200356
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||       |||||||||||| |||| ||| | ||||| |||||    
T  17200244 tatgtatttttattaaacaaatatctgttttataatttaaaatatcaatcgttagatatttttttgccacatgtcttacatccaaaccttaaatggagta 17200343  T
Q  101 aatggagcttagc 113  Q
    |||||||||||||    
T  17200344 aatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 4371524 - 4371454
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 12232728 - 12232826
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagt 99  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| | || |||||       ||||||||||||||||||||||||||||| ||||    
T  12232728 tatgtatttttattaaacaaatatttgttttttaatttaatatctcacctgttagatatttttttgccacatgtcttgcatctaaatcctaaatggagt 12232826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 21265672 - 21265563
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||||| ||||    
T  21265672 tgttttttaatttaaaatctcaaccgttagatatttttt-gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagca 21265574  T
Q  126 tacccgaactc 136  Q
    ||||| |||||    
T  21265573 taccctaactc 21265563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 20296607 - 20296718
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||||||  ||||       |||||||||||| |||| || || ||||| ||||||||||||||||||||||||  ||||    
T  20296607 tgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagca 20296706  T
Q  126 tacccgaactca 137  Q
    ||||| ||||||    
T  20296707 tacccaaactca 20296718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 20296397 - 20296270
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||||||||||  | ||||||||||||||||| ||||||  ||||       |||| ||||||| |||| ||| |||||||  ||||    
T  20296397 tatgtatttttattaaacaaatattcggtttttaatttaaaatcttaaccgttggatacttttttgccatatgtctttcatccaaaccctaaatgaagta 20296298  T
Q  101 aatggagcttagcctaaatgaagcatac 128  Q
    |||||| ||||||| ||||| |||||||    
T  20296297 aatggatcttagccaaaatggagcatac 20296270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 34645737 - 34645847
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||| |||| ||| ||||||| || ||||||||| | |||||||||| |  |    
T  34645737 tgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaata 34645836  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  34645837 tacccgaactc 34645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13979767 - 13979710
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||    
T  13979767 tatgtatttttattaaacaaatatttattttttaatttaaaatctcaatcgttagata 13979710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8237978 - 8237886
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaat 94  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||  | |||||       |||||||||||||||||  ||||||||||    
T  8237978 tatgtatttttattaaacaaatatttg-tttttaatttaaaatctcaactattagatacttttttgccacatgtcttgcatcctaatcctaaat 8237886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29892934 - 29892820
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||| ||| | |||||        |||||| |||| |||| |||||||||||| | ||    
T  29892934 tatgtatttttattaaataaatatttattttttaatttaaaatctcgaccattagatattttttt-ccacatatcttacatccaaatcctaaataaaata 29892836  T
Q  101 aatggagcttagccta 116  Q
    ||||||||||| ||||    
T  29892835 aatggagcttaaccta 29892820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 32222097 - 32222055
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagc 108  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  32222097 gccacatgtcttgcatctaaatcctaaatggattaaatggagc 32222055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 33491416 - 33491453
Alignment:
Q  83 taaatcctaaatagagtaaatggagcttagcctaaatg 120  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33491416 taaaccctaaatagagtaaatggagcttagcctaaatg 33491453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 4682825 - 4682757
Alignment:
Q  67 ccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaact 135  Q
    ||||||||||||||||||||  |||||| ||||||||| ||||||   |||||| | ||||||||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 38418588 - 38418479
Alignment:
Q  28 ttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatc-ctaaatagagtaaatggagcttagcctaaatgaagcat 126  Q
    ||||||||||||||||||||||| | | ||        ||||||||||||||||||||||| || ||  ||||||||||||| |  |||||||| |||||    
T  38418588 ttttttaatttaaaatctcaacccttaaatgtttgtttgccacatgtcttgcatctaaatctctcaacggagtaaatggagcatcacctaaatggagcat 38418489  T
Q  127 acccgaactc 136  Q
    |||| |||||    
T  38418488 acccaaactc 38418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 33491366 - 33491329
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||||||||||||| | |||||||||||||    
T  33491366 taaatggagcttagcctaaatggaacatacccgaactc 33491329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 33491448 - 33491485
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  33491448 taaatggagcttaacctaaatggagcatacccgaactc 33491485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4041349 - 4041483
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| ||||||| |||||    
T  4041349 tatgtatttttagtaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagta 4041448  T
Q  101 aatggagcttagcctaaatgaagcatacccgaact 135  Q
    |||| ||||||||||||||| ||||||||||||||    
T  4041449 aatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 38499953 - 38499819
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||        ||||||||||||| ||| ||| ||||||| |||||    
T  38499953 tatgtatttttattaaacaaatatttggtttttagtttaaaatctcaaccgttagat-tttttttgccacatgtcttgtatccaaaccctaaatggagta 38499855  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||||||||||| |||||||||||||||    
T  38499854 aatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 53197123 - 53196988
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||       ||||||||| ||||||| ||| |||||||||||||    
T  53197123 tatgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgttttgcatccaaaccctaaatagagta 53197024  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||| || ||||| ||||||  ||||||||||||||    
T  53197023 aatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8799482 - 8799589
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||       ||||||||||||||||||||| ||||||| |||||    
T  8799482 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttatatatttttttgccacatgtcttgcatctaaaccctaaatggagta 8799581  T
Q  101 aatggagc 108  Q
    ||||||||    
T  8799582 aatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46883578 - 46883685
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| ||||||| |||||    
T  46883578 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagta 46883677  T
Q  101 aatggagc 108  Q
    ||||||||    
T  46883678 aatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29828847 - 29828965
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       ||||||| |||| |||| ||||||||||| || ||    
T  29828847 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttacatccaaatcctaaatggaata 29828946  T
Q  101 aatggagcttagcctaaat 119  Q
    ||||||||||||| |||||    
T  29828947 aatggagcttagcttaaat 29828965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43797518 - 43797646
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||  ||||       | |||||||||| |||| ||| |||||||||||||    
T  43797518 tatgtatttttattaaacaaatatttggtttttaatttaaaatcttaaccgttggatacttttttgtcacatgtctttcatccaaaccctaaatagagta 43797617  T
Q  101 aatggagcttagcctaaatgaagcatacc 129  Q
    |||||| ||||||||||||| ||||||||    
T  43797618 aatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 8799425 - 8799316
Alignment:
Q  28 ttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcata 127  Q
    |||||||||||||||||||||| || |||||       ||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||| ||||||    
T  8799425 ttttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcata 8799326  T
Q  128 cccgaactca 137  Q
    ||||||||||    
T  8799325 cccgaactca 8799316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 25349876 - 25350005
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||        | |||||||||| |||| ||| |||||||||| ||    
T  25349876 tatgtatttttgttaaacaaatatttattttttaatttaaaatctcaaccgttagatgtttttttggcacatgtcttacatccaaaccctaaatagaata 25349975  T
Q  101 aatggagcttagcctaaatgaagcataccc 130  Q
    |||||||||||   |||||| |||||||||    
T  25349976 aatggagcttaatttaaatggagcataccc 25350005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 43797462 - 43797361
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||||||  ||||       ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||| ||||    
T  43797462 tgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagca 43797363  T
Q  126 ta 127  Q
    ||    
T  43797362 ta 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 38500013 - 38500122
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||| || |||||        ||||||||||| |||| ||| ||||| | ||||||||||||||||||||||||| ||||    
T  38500013 tgttttttaatttaaaatctcaactgttagatattttttt-ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagca 38500111  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  38500112 tacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 53197214 - 53197279
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccg 131  Q
    ||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 29828722 - 29828685
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29828722 taaatggagcttagcctaaatgaagcatacccgaactc 29828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 48346168 - 48346280
Alignment:
Q  25 ctgttttttaatttaaaatctcaaccgtaagatannnnnnn-gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaag 123  Q
    |||||||||||||||||||||||||||| || |         ||||||||| ||||||| |||| ||||||| ||||||| || || | |||||||| ||    
T  48346168 ctgttttttaatttaaaatctcaaccgttagtttttttttttgccacatgttttgcatccaaattctaaataaagtaaatagaactcaacctaaatggag 48346267  T
Q  124 catacccgaactc 136  Q
    |||||||||||||    
T  48346268 catacccgaactc 48346280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 43797778 - 43797651
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||| ||||||||||||||||| | |||||||||||||||| |||||| | |||||       |||||||||||| |||| ||| |||        ||    
T  43797778 tatgtaattttattaaacaaatatttattttttaatttaaaatttcaaccattagatatttttttgccacatgtcttacatccaaa-cct--------ta 43797688  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||| ||||| |||||| ||||||||||||||||    
T  43797687 aatggagtttagcttaaatggagcatacccgaactca 43797651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 46883525 - 46883424
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       |||||||||||| |||| ||| ||         ||||||||| |||||||||||| ||||    
T  46883525 tgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccc---------taaatggagtttagcctaaatggagca 46883435  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  46883434 tacccgaactc 46883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 43797836 - 43797941
Alignment:
Q  29 tttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatac 128  Q
    ||||||||||||||||||| |||| |||||       ||||||||||||||||| ||  ||||||| |||||||| |  ||||||  |||||||||||||    
T  43797836 tttttaatttaaaatctcatccgttagatatttttt-gccacatgtcttgcatccaagccctaaatggagtaaatagcacttagcaaaaatgaagcatac 43797934  T
Q  129 ccgaact 135  Q
    | |||||    
T  43797935 ctgaact 43797941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 48346123 - 48346072
Alignment:
Q  7 tttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||| | |||||| ||||||||||| |||||| |||||    
T  48346123 tttttattaaacaaatatttatttttttatttaaaatctaaaccgttagata 48346072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 20383290 - 20383327
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  20383290 taaatggagtttagcctaaatgaagcatactcgaactc 20383327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 4041293 - 4041261
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagata 58  Q
    ||||||||||||||||||||||||||| |||||    
T  4041293 tgttttttaatttaaaatctcaaccgttagata 4041261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 19318313 - 19318450
Alignment:
Q  1 tatgtatttttattaaacaaatatctgtttt-ttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagt 99  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||       ||||||||||||||||||||| | ||||| ||||    
T  19318313 tatgtatgtttattaaacaaatatttgttttcttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatctaaaccttaaatggagt 19318412  T
Q  100 aaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  19318413 aaatgaagcttagcctaaatggagcatacccgaactca 19318450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 35363453 - 35363317
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||| | ||        ||||||||| |||||||||||  |||||| |||||    
T  35363453 tatgtatttttattaaacaaatacttattttttaatttaaaatctcaaccgttatatttttttttgccacatgtgttgcatctaaactctaaatggagta 35363354  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||| | ||||||||||||| ||||||||||||||||    
T  35363353 aatgaaacttagcctaaatggagcatacccgaactca 35363317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35207344 - 35207476
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |  |        ||||||||||||||||| ||| ||||||| |||||    
T  35207344 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcgaccgttattt---tttttgccacatgtcttgcatccaaaccctaaatggagta 35207440  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||| |||||||||||| |||||| ||||||||    
T  35207441 aatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 35207288 - 35207178
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |  |    
T  35207288 tgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaata 35207189  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  35207188 tacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 48006290 - 48006397
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||| | |||       ||||||||| ||||||| |||||||||||||||||    
T  48006290 tatgtattttcattaaacaaatatttattttttaatttaaaatctcaaccgttaaatatttttttgccacatgttttgcatccaaatcctaaatagagta 48006389  T
Q  101 aatggagc 108  Q
    ||||||||    
T  48006390 aatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 25048205 - 25048325
Alignment:
Q  17 acaaatatctgttttttaatttaaaatctcaaccgtaaga-tannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcct 115  Q
    |||||||| | |||||||||||||||||||||||||  || ||       | ||||||||||||||| |||||||||||  |||||||||||||||||||    
T  25048205 acaaatatttattttttaatttaaaatctcaaccgtttgaatatttttttgtcacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcct 25048304  T
Q  116 aaatgaagcatacccgaactc 136  Q
    ||||| |||||||||||||||    
T  25048305 aaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6408420 - 6408551
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagt- 99  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| |||||||  |||     
T  6408420 tatgtatttttattagacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaagta 6408519  T
Q  100 aaatggagcttagcctaaatgaagcatacccg 131  Q
    ||| | || ||| |||||||| ||||||||||    
T  6408520 aaaagaagtttaacctaaatggagcatacccg 6408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 19318452 - 19318521
Alignment:
Q  68 cacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactca 19318521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2834367 - 2834500
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||| || | |||       ||||||||| ||| ||| ||| ||||||| || ||    
T  2834367 tatgtatttttattaaacaaatattt--tttttaatttaaaatctcaactgttacatattattttgccacatgttttgtatccaaaccctaaatggaata 2834464  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||| ||||||||||||| ||||||||| |||||    
T  2834465 aatggaacttagcctaaatggagcatacccaaactc 2834500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 26903563 - 26903431
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||       ||||||||| |   |   ||| |||||||  ||||    
T  26903563 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttcgatacttttttgccacatgttt---aaacaaaccctaaatgaagta 26903467  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  26903466 aatgaagcttagcctaaatg-agcatacccgaactca 26903431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 39983870 - 39983930
Alignment:
Q  68 cacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatac 128  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||| |||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 29474604 - 29474707
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||| |||||||| |||||        | |||||||||||||| ||   ||||||||||||||||||| |||||||||||| ||||    
T  29474604 tgttttttaatttaaaatttcaaccgttagatattttttt-ctacatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagca 29474702  T
Q  126 taccc 130  Q
     ||||    
T  29474703 caccc 29474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 2830869 - 2830833
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaact 135  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2830869 taaatggagcttaacctaaatgaagcatacccgaact 2830833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29474548 - 29474512
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29474548 tatgtatttttattaaacaaatatttgttttttaatt 29474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 46409617 - 46409659
Alignment:
Q  7 tttttattaaacaaatatctgttttttaatttaaaatctcaac 49  Q
    |||||||||||||||||| |||||||| |||| ||||||||||    
T  46409617 tttttattaaacaaatatttgtttttttattttaaatctcaac 46409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 6408305 - 6408261
Alignment:
Q  84 aaatcctaaatagagtaaatggagcttagcctaaatgaagcatac 128  Q
    |||||||||||  |||||||||||||||| ||||||| |||||||    
T  6408305 aaatcctaaatgaagtaaatggagcttagactaaatggagcatac 6408261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 48006234 - 48006202
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagata 58  Q
    ||||||||||||||||||||||||||| |||||    
T  48006234 tgttttttaatttaaaatctcaaccgttagata 48006202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 14999306 - 14999171
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||       ||||||||||||||||| ||| ||||||| |||||    
T  14999306 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaactattagatactttattgccacatgtcttgcatccaaaccctaaatggagta 14999207  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||| |||||||||||||||| |||||| ||||||||    
T  14999206 aattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43801637 - 43801773
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||| || |||||       ||||||| ||||||||| |||  |||||| |||||    
T  43801637 tatgtatttttattaaacaaatattagttttttaatttaaaatttcaactgttagatatttttttgccacatatcttgcatccaaactctaaatggagta 43801736  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||||||||||| | ||||||||||||||    
T  43801737 aatggagcttagcctaaatggaacatacccgaactca 43801773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 41721993 - 41722128
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||       || |||||||||||||| ||   ||||||| ||||    
T  41721993 tatgtatttttattaaacaaatatttgtttttttatttaaaatcttaaccgttagatatttttttgcaacatgtcttgcatccaagctctaaataaagta 41722092  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||| |||||||||||||||||| |||||||||||||    
T  41722093 aatagagcttagcctaaatgaaacatacccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6911195 - 6911301
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||       ||||||||||||||||| ||| ||||||| |||||    
T  6911195 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccctaaatggagta 6911294  T
Q  101 aatggag 107  Q
    |||||||    
T  6911295 aatggag 6911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 16325010 - 16325147
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngcc--acatgtcttgcatctaaatcctaaatagag 98  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||        ||  |||||||||||||| ||| ||||||| |||    
T  16325010 tatgtatttttatcaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttaccatacatgtcttgcatccaaaccctaaatggag 16325109  T
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||||| || || |||||||||||||| |||||||    
T  16325110 taaatggagtttggcttaaatgaagcatactcgaactc 16325147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 41403925 - 41404061
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata-nnnnnnngccacatgtcttgcatctaaatcctaaatagagt 99  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||        | ||||||||||||||| ||| ||||||||||||    
T  41403925 tatgtatttttattaaacaaatatttgtttttaaatttaaaatctcaaccgttaaatattttgtttgtcacatgtcttgcatccaaaccctaaatagagt 41404024  T
Q  100 aaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||| || |||| |||||||| ||||||||| |||||    
T  41404025 aaattgaacttaacctaaatggagcatacccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 6911139 - 6911029
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||| ||| |||||       |||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||| ||||    
T  6911139 tgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagca 6911040  T
Q  126 tacccgaactc 136  Q
    |||| ||||||    
T  6911039 tacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 16324954 - 16324843
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       | ||||||||||||||| ||| ||||||| || ||||| |||||||||||||||| ||||    
T  16324954 tgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagca 16324855  T
Q  126 tacccgaactca 137  Q
    | ||||||||||    
T  16324854 tgcccgaactca 16324843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40621693 - 40621750
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  40621693 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagata 40621750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 41403869 - 41403760
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||| || |||||       | ||||| |||| |||| ||||||||||| |||||||| |||||||  ||||||||||||    
T  41403869 tgttttttaatttaaaatctcaactgttagatatttttttgtcacatatcttacatcaaaatcctaaatggagtaaattgagcttaatctaaatgaagca 41403770  T
Q  126 tacccgaact 135  Q
    ||||||||||    
T  41403769 tacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 15009089 - 15009160
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||| |||| ||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactca 15009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 8489483 - 8489372
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||| ||| |||||       |||||||||||| |||| ||| ||||||| || |||||| |||||| |||||||| ||||    
T  8489483 tgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagca 8489384  T
Q  126 tacccgaactca 137  Q
    ||||| ||||||    
T  8489383 tacccaaactca 8489372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 43801540 - 43801469
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||| |||| |||  |||||| ||||||||| || |||||||||||||||||||||||||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactca 43801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 22781226 - 22781325
Alignment:
Q  8 ttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggag 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||       | ||||| ||||||||| ||| ||||||| ||||||||||||    
T  22781226 ttttattaaacaaatatttgttttttaatttaaaatctcaaccgttaaata-ttttttgtcacatatcttgcatccaaaccctaaattgagtaaatggag 22781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8489539 - 8489582
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatc 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  8489539 tatgtatttttattaaacaaatatttgttttttaatttaaaatc 8489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 22781165 - 22781063
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||| || |||||       |||||||| |||||||| ||| ||| ||| ||||||||| || ||||||||||| || ||    
T  22781165 tgttttttaatttaaaatctcaactgttagatatctttttgccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaataaaaca 22781066  T
Q  126 tac 128  Q
    |||    
T  22781065 tac 22781063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 14999419 - 14999477
Alignment:
Q  79 catctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||| |||||||||||  |||||||| |||||| |||||||| |||||| |||||||||    
T  14999419 catccaaatcctaaatgaagtaaatgtagcttaacctaaatggagcatatccgaactca 14999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 40621681 - 40621643
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  40621681 taaatggagtttagcctaaatggagcatacccgaactca 40621643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 6911299 - 6911340
Alignment:
Q  96 gagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  6911299 gagtaaatggagcttagcctaaattgagcgtacccgaactca 6911340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 24883135 - 24883269
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||       ||||||| ||||||||| ||| ||||||| |||||    
T  24883135 tatgtatttttattaaacaaatattt-ttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttgcatccaaaccctaaatggagta 24883233  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||||||||||| | |||||||||||||    
T  24883234 aatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 3385477 - 3385612
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||        |||||| |||| |||| ||| ||||||| |||||    
T  3385477 tatgtatttttattaaacaaatatttattttttaatttaaaatctcaaccgttagatatttttttaccacatatcttacatccaaaccctaaatggagta 3385576  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||| ||||||||| |||||||||||||||    
T  3385577 aatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 27171934 - 27171800
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| ||||| |||||       |||||||||||| |||| ||| | ||||| |||||    
T  27171934 tatgtatttctgttaaacaaatatttgttttttaatttaaaatctcgaccgttagatatttttttgccacatgtcttacatccaaaccataaatggagta 27171835  T
Q  101 aatggagcttagcctaaatgaagcatacccgaact 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  27171834 aatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 34970095 - 34969987
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||        |||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||    
T  34970095 tgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagca 34969996  T
Q  126 tacccgaac 134  Q
    |||||||||    
T  34969995 tacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 33156621 - 33156747
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||        ||||||||||||| ||| ||| ||||||| |||||    
T  33156621 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttgtatccaaaccctaaatggagta 33156719  T
Q  101 aatggagcttagcctaaatgaagcatac 128  Q
    |||  ||||||||||||||| |||||||    
T  33156720 aataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 49776953 - 49776819
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||   |||        |||||||||||||||| ||||||||||| |||||    
T  49776953 tatgtatttttattaaacaaatat-tatcttttaatttaaaatctcaaccgttcaatatttttttaccacatgtcttgcatccaaatcctaaatggagta 49776855  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||  |||||||| |||||| |||||||||||||||    
T  49776854 aataaagcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33401023 - 33401156
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||| | ||        |||||||||||| |||||||| | |||||| ||||    
T  33401023 tatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgtta-atttttttttgccacatgtcttacatctaaaccttaaataaagta 33401121  T
Q  101 aatggagcttagcctaaatgaagcatacccgaact 135  Q
    ||| |||||||||||||||| |||||| |||||||    
T  33401122 aattgagcttagcctaaatgtagcatatccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 37948923 - 37948797
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       || ||||||||| |||| ||| | ||||| |||||    
T  37948923 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgcaacatgtcttacatccaaaccttaaattgagta 37948824  T
Q  101 aatggagcttagcctaaatgaagcata 127  Q
    |||| |||||| | |||||| ||||||    
T  37948823 aatgaagcttaacttaaatggagcata 37948797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13947057 - 13946929
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       |||||||||||| |||| ||| ||         ||    
T  13947057 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccc---------ta 13946967  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactcag 138  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  13946966 aatggagcttagcctaaatggagcatacccgaattcag 13946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 49777014 - 49777117
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    ||||||||||||||||||||||||||| |||||       | ||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| ||||    
T  49777014 tgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagca 49777113  T
Q  126 tacc 129  Q
    ||||    
T  49777114 tacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 43297019 - 43297110
Alignment:
Q  3 tgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaat 94  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||       | ||||||||||||||| |||||||||||    
T  43297019 tgtatttttattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttggcacatgtcttgcatccaaatcctaaat 43297110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 34970151 - 34970256
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||       |||||||||||| |||| ||| | |||||| ||||    
T  34970151 tatgtatttttattaaacaaatatttattttttaatttaaaatcttaaccgttagatatttttttgccacatgtcttacatccaaaccttaaataaagta 34970250  T
Q  101 aatgga 106  Q
    ||||||    
T  34970251 aatgga 34970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39781199 - 39781148
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgt 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39781199 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgt 39781148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42082948 - 42082897
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgt 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42082948 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgt 42082897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 24883041 - 24882971
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  24883041 gccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactc 24882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 3385378 - 3385307
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    |||||||||||| |||| ||| ||||||| | ||||| | ||||||||||||||||||||||||||||||||    
T  3385378 gccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactca 3385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 34622556 - 34622627
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||||||||||  ||| | ||||| |||||| |||||||||| ||||||| ||||||||||||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactca 34622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38338833 - 38338890
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||||| || |||||    
T  38338833 tatgtatttttattaaacaaatatttattttttaatttaaaatttcaactgttagata 38338890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 33400925 - 33400857
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaac 134  Q
    |||||||| ||| |||| ||| | ||||| |||||||||||||||||| |||||| ||||| |||||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccgaac 33400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 27172054 - 27172091
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  27172054 taaatggagcttagcctaaatggagcatactcgaactc 27172091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 33156520 - 33156456
Alignment:
Q  71 atgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    ||||||| |||| |||  |||||| ||||||||||||| |||||| |||| |||||||||||||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccgaactc 33156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 38338777 - 38338745
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagata 58  Q
    ||||||||||||||||||||||||||| |||||    
T  38338777 tgttttttaatttaaaatctcaaccgttagata 38338745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 11789994 - 11789859
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||   |||       ||||||| ||||||||||||| ||||||| |||||    
T  11789994 tatgtatttctattaaacaaatatttgttttttaatttaaaatctcaaccgttgaatatttttttgccacatatcttgcatctaaaccctaaatggagta 11789895  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||| ||||| ||||||||| |||||||||||||||    
T  11789894 aatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5465988 - 5465855
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||       |||||||||||| |||||||| |||||||  ||||    
T  5465988 tatgtattattattaaataaatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatctaaaccctaaatgaagta 5465889  T
Q  101 aatggagcttagcctaaatgaagcatacccgaac 134  Q
    |||| | ||||||||||||| |||||||||||||    
T  5465888 aatgaaacttagcctaaatggagcatacccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23655233 - 23655372
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnn-gccacatgtcttgcatctaaatcctaaatagagt 99  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||         ||||||||||||||||||||| ||||||| || |    
T  23655233 tatgtatttttattaaacaaatatttgatttttaatttaaaatttcaaccgttagattttctttttgccacatgtcttgcatctaaaccctaaatggaat 23655332  T
Q  100 aaatggagcttagcctaaatgaagcatacccgaactcagt 139  Q
    ||||| |||||| |||||||| |||||||||||| |||||    
T  23655333 aaatgaagcttaacctaaatggagcatacccgaaatcagt 23655372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 50544364 - 50544251
Alignment:
Q  28 ttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcata 127  Q
    |||||||||||||||||||| |||| |||||       ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||    
T  50544364 ttttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcata 50544265  T
Q  128 cccgaactcagtgt 141  Q
     |||||||| ||||    
T  50544264 tccgaactcggtgt 50544251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 46993235 - 46993371
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||       || | || ||||||||  ||||| ||||| |||||    
T  46993235 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaatcgttagatatttttttgctaaatatcttgcattcaaatcttaaatggagta 46993334  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||| ||||||||  |||||| |||||||||| |||||    
T  46993335 aattgagcttagtttaaatggagcatacccggactca 46993371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19037857 - 19037750
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||        | | ||||||||||||| ||||| ||||| |||||    
T  19037857 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatttttttttgtcgcatgtcttgcatccaaatcttaaatggagta 19037758  T
Q  101 aatggagc 108  Q
    ||||||||    
T  19037757 aatggagc 19037750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9551359 - 9551266
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaat 94  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||       | ||||||||||||||| ||||| |||||    
T  9551359 tatgtatttttattaaacaaatatttgttttttaatttaaaatctcaaccgttagatatttttttgacacatgtcttgcatccaaatcttaaat 9551266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 24673894 - 24674023
Alignment:
Q  8 ttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggag 107  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| |||||       | || ||||||| |||| |||  |||||||||||||||| ||    
T  24673894 ttttattaaataaatatttgttttttaatttaaaatctcaatcgttagatatttttttgtcatatgtcttacatccaaactctaaatagagtaaatgaag 24673993  T
Q  108 cttagcctaaatgaagcatacccgaactca 137  Q
     |||||||||||| |||||| |||||||||    
T  24673994 tttagcctaaatggagcatatccgaactca 24674023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 9551418 - 9551526
Alignment:
Q  28 ttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcata 127  Q
    ||||||||||||||||||||||||| |||||       |||| ||||||| |||| ||  ||||||| |||||||||||| |||| ||||||| ||||||    
T  9551418 ttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcata 9551517  T
Q  128 cccgaactc 136  Q
    |||||||||    
T  9551518 cccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17914916 - 17915049
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    ||||||||| |||||||||||| | |  ||||||||||||||| ||||||||  ||||       ||||||||||||||||| |||   ||||| |||||    
T  17914916 tatgtatttctattaaacaaattttt--tttttaatttaaaatatcaaccgttggatatttttttgccacatgtcttgcatccaaactttaaatggagta 17915013  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||| ||||||||||||| |||||| ||||||||    
T  17915014 aatggaacttagcctaaatggagcatatccgaactc 17915049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 46993176 - 46993072
Alignment:
Q  27 gttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcat 126  Q
    |||||||||||||| ||||||||||| |||||       || |||| ||||||||| ||| |||||||||| ||||||||||||| |||||||| |||||    
T  46993176 gttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcat 46993077  T
Q  127 acccg 131  Q
    |||||    
T  46993076 acccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 54316060 - 54316131
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactca 137  Q
    ||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactca 54316131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 7062079 - 7061972
Alignment:
Q  29 tttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatac 128  Q
    ||||||||| |||||||||||||| | |||       ||||||||||||||||| ||| | ||||| |||||||| ||| |||||||||||| |||||||    
T  7062079 tttttaattaaaaatctcaaccgttatatatttttttgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatac 7061980  T
Q  129 ccgaactc 136  Q
    ||||||||    
T  7061979 ccgaactc 7061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 42475976 - 42475892
Alignment:
Q  36 tttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatg 120  Q
    ||||||||||||| ||| |||||       ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  42475976 tttaaaatctcaatcgttagatatttttttgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatg 42475892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 11790053 - 11790136
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagct 109  Q
    ||||||||||||||||||||||||||| |||||       ||||||||||||||||| ||| |||||||  | |||||||||||    
T  11790053 tgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatggagct 11790136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 3556534 - 3556624
Alignment:
Q  5 tatttttattaaacaaatatctgtttttt-aatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaat 94  Q
    |||||||||||||||||||| ||||||||  | |||||||||||||||| |||||       ||||||||||||||||| ||| |||||||    
T  3556534 tatttttattaaacaaatatttgttttttctaattaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaat 3556624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26297479 - 26297536
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||||| ||||| | |||||||||||||||||||||| || |||||    
T  26297479 tatgtatttttattaaacgaatatttattttttaatttaaaatctcaactgttagata 26297536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1025041 - 1024990
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgt 52  Q
    ||||||||||||||||||||||||   |||||||||||||||| ||||||||    
T  1025041 tatgtatttttattaaacaaatattaattttttaatttaaaatatcaaccgt 1024990  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 21785835 - 21785786
Alignment:
Q  9 tttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagata 58  Q
    |||||||||||||||| | |||||||||||||||||||||| || |||||    
T  21785835 tttattaaacaaatatttattttttaatttaaaatctcaactgttagata 21785786  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 21785891 - 21785983
Alignment:
Q  28 ttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatg 120  Q
    |||||||||||||||||||||  || ||||        |||||||||  |||||| |||  |||||| |||||||||||||||||||||||||    
T  21785891 ttttttaatttaaaatctcaattgttagatgtttttttgccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaatg 21785983  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 3556473 - 3556366
Alignment:
Q  29 tttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatac 128  Q
    |||||||| ||||||||||||| | |||||       || |||||||||||||| ||| | ||||| ||||||||| || ||||| |||||| ||||| |    
T  3556473 tttttaatataaaatctcaacccttagatatttttttgcaacatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgc 3556374  T
Q  129 ccgaactc 136  Q
    ||| ||||    
T  3556373 ccggactc 3556366  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 19037951 - 19037989
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatg 104  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  19037951 gccacatgtcttgcatccaaatcctaaatggagtaaatg 19037989  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 32160381 - 32160311
Alignment:
Q  66 gccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||| |||||||| ||||||| || ||||||| |||   | ||||||||||||||| ||||||    
T  32160381 gccacatgtctttcatctaaagcctaaatggactaaatggggctatacataaatgaagcatacctgaactc 32160311  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 8538360 - 8538421
Alignment:
Q  68 cacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagcatacc 129  Q
    ||||||||||||||| ||| ||||||| || ||||||||||| |  ||||||| ||||||||    
T  8538360 cacatgtcttgcatccaaaccctaaatggactaaatggagctaatactaaatggagcatacc 8538421  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 26297360 - 26297323
Alignment:
Q  99 taaatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  26297360 taaatggagcttagcctaaatggagcatacccaaactc 26297323  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 35256189 - 35256136
Alignment:
Q  89 ctaaatagagtaaatggagcttagcctaaatgaagcatacccgaactcagtgtg 142  Q
    |||||| ||||||||| ||||||| ||||||  |||||||||||||||| ||||    
T  35256189 ctaaatggagtaaatgcagcttagtctaaatagagcatacccgaactcaatgtg 35256136  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32591283 - 32591247
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatt 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  32591283 tatgtatttttattaaacaaatatttattttttaatt 32591247  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 16125657 - 16125522
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| ||| | |||       ||||||||||||||||| ||| |||||||  | ||    
T  16125657 tatgtatttttattaaacaaatatttgttttttaatttaaaatttcaatcgttaaatatttttttgccacatgtcttgcatccaaaccctaaatgaaata 16125558  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||| || |||||||||||| |||||||||||||||    
T  16125557 aatgaagtttagcctaaatggagcatacccgaactc 16125522  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22748754 - 22748889
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagta 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||  |||         ||||||||||| |||| ||||||||||| |||||    
T  22748754 tatgtatttttattaaacaaatatttgatttttaatttaaaatcttaaccgttggatgcttttttaccacatgtctttcatccaaatcctaaatggagta 22748853  T
Q  101 aatggagcttagcctaaatgaagcatacccgaactc 136  Q
    |||||| ||||| ||||||| |||||||| ||||||    
T  22748854 aatggatcttagtctaaatggagcatacctgaactc 22748889  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 22748698 - 22748588
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||||||  ||||       ||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||  ||||    
T  22748698 tgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagca 22748599  T
Q  126 tacccgaactc 136  Q
    |||||||||||    
T  22748598 tacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 16125713 - 16125824
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||| | || |||||       | ||||| ||||||||| ||   |||||| ||||||||||||||||| ||||||  ||||    
T  16125713 tgttttttaatttaaaatctcatctgttagatattattttgtcacatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaatagagca 16125812  T
Q  126 tacccgaactca 137  Q
    || |||||||||    
T  16125813 tatccgaactca 16125824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 24565270 - 24565361
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaat 94  Q
    |||||||||||||||||||| | | |  |||||||||||||||||||||||| ||||        |||||||||||| |||||||| |||||||    
T  24565270 tatgtatttttattaaacaatttttt--tttttaatttaaaatctcaaccgttagatgtttttttgccacatgtcttacatctaaaccctaaat 24565361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11014456 - 11014408
Alignment:
Q  1 tatgtatttttattaaacaaatatctgttttttaatttaaaatctcaac 49  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||||    
T  11014456 tatgtgtttttattaaacaaatatttactttttaatttaaaatctcaac 11014408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 6705323 - 6705213
Alignment:
Q  26 tgttttttaatttaaaatctcaaccgtaagatannnnnnngccacatgtcttgcatctaaatcctaaatagagtaaatggagcttagcctaaatgaagca 125  Q
    |||||||||||||||||||||||||||||  |        ||||||| |||| |||| ||||| ||||| || |||||| | |||| ||||| || ||||    
T  6705323 tgttttttaatttaaaatctcaaccgtaatttttttttttgccacatatcttacatcaaaatcttaaatggaataaatgaaacttaacctaattggagca 6705224  T
Q  126 tacccgaactc 136  Q
    ||||| |||||    
T  6705223 tacccaaactc 6705213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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