View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11415_high_4 (Length: 270)
Name: NF11415_high_4
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11415_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30564695 - 30564436
Alignment:
| Q |
1 |
caataacataattctcttttattatatcataaacaaaaacaaattgtcccttaatttttacatcaatattaatgtaatgctggataatacaattgcagac |
100 |
Q |
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| T |
30564695 |
caataacataattctcttttattatatcataaacaaaaacaaattgtcccttaatttttacatcaatattaatgtaatgctggataatacaattgcagac |
30564596 |
T |
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| Q |
101 |
aatagtgactggtgctggggatgagactctgaggttttggaatgttttcccatcaatgaaaacacctgtaagcattgcattgtgaccaattttcagttat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30564595 |
aatagtgactggtgctggggatgagactctgcggttttggaatgttttcccatcaatgaaaacacctgtaagcattgcattgtgaccaattttcagttat |
30564496 |
T |
|
| Q |
201 |
tgcatattatgttcctagtattgcttgaaaggactctcctaacttttctttttgcttcat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30564495 |
tgcatattatgttcctagtattgcttgaaaggactctcctaacttttctttttgcttcat |
30564436 |
T |
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