View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11415_low_6 (Length: 239)
Name: NF11415_low_6
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11415_low_6 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 382 - 584
Alignment:
| Q |
33 |
cttatggcctggtttcctgcatgatattttcatttaatatagcattgtaatctgtatggagacctcagcaagatgttaacactatacattatcaggttgt |
132 |
Q |
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| T |
382 |
cttatggcctggtttcctgcatgatatttttatttaatatagcattggaatctgtatggagacctcagcaagatgttaacactatacattatcaggttgt |
481 |
T |
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| Q |
133 |
gaaaccacttttacacgagaggacaagaagaaaagtgcaggtcttatcaggatgctgacgagaggagttgttaaatgtaagatttttgtttttgcctttg |
232 |
Q |
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| T |
482 |
gaaaccacttttacacgagaggacaagaagaaaagtgcaggtcttatcaggatgtggacgagaggagttgttaaatgtaagatttttgtttttgcttttg |
581 |
T |
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| Q |
233 |
ctt |
235 |
Q |
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||| |
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| T |
582 |
ctt |
584 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 9886727 - 9886674
Alignment:
| Q |
125 |
caggttgtgaaaccacttttacacgagaggacaagaagaaaagtgcaggtctta |
178 |
Q |
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| T |
9886727 |
caggttgtgaagccacttttacaagagaggactaggaaaaaagtgcaagtctta |
9886674 |
T |
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