View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11415_low_7 (Length: 228)
Name: NF11415_low_7
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11415_low_7 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 1 - 191
Alignment:
| Q |
38 |
gaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgatacaagtcaaacataaaacaaatttttaaccc |
137 |
Q |
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| T |
1 |
gaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgatacaagtcaaacataaaacaaatttttgcccc |
100 |
T |
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| Q |
138 |
aaaatttggagttgaggtctaacttttaatttattgcttcatgaaaaattcatgcagcgtaaaatgttcaattttttcctactatcctttt |
228 |
Q |
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| T |
101 |
aaaatttggagttgaggtctaacttttaatttgttgcttcatgaaaaattcatgcagcgtaaaatgttcaattttttcctactatcctttt |
191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 55824499 - 55824638
Alignment:
| Q |
7 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
106 |
Q |
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| T |
55824499 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
55824598 |
T |
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| Q |
107 |
acaagtcaaacataaaacaaatttttaacccaaaatttgg |
146 |
Q |
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| T |
55824599 |
acaagtcaaacataaaacaaatttttaccccaaaatttgg |
55824638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 56150482 - 56150343
Alignment:
| Q |
7 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
106 |
Q |
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| T |
56150482 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
56150383 |
T |
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| Q |
107 |
acaagtcaaacataaaacaaatttttaacccaaaatttgg |
146 |
Q |
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| T |
56150382 |
acaagtcaaacataaaacaaatttttaccccaaaatttgg |
56150343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 56152953 - 56152828
Alignment:
| Q |
7 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
106 |
Q |
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| T |
56152953 |
gatccaacaggaccaatagagttggtatagtgaacaactttgagagcatgttgaaaagatcattagcaggcccgaaccaataaacagttgtgtatctgat |
56152854 |
T |
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| Q |
107 |
acaagtcaaacataaaacaaattttt |
132 |
Q |
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| T |
56152853 |
acaagtcaaacataaaacaaattttt |
56152828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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