View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11415_low_8 (Length: 224)

Name: NF11415_low_8
Description: NF11415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11415_low_8
NF11415_low_8
[»] chr5 (16 HSPs)
chr5 (1-201)||(31288757-31288957)
chr5 (85-175)||(31332452-31332542)
chr5 (84-167)||(31407101-31407184)
chr5 (85-173)||(31317681-31317769)
chr5 (91-175)||(31381237-31381321)
chr5 (84-167)||(31643559-31643642)
chr5 (85-163)||(31285050-31285128)
chr5 (84-169)||(31279164-31279249)
chr5 (85-167)||(40843003-40843085)
chr5 (84-173)||(31363325-31363414)
chr5 (89-173)||(31330253-31330337)
chr5 (89-173)||(31379035-31379119)
chr5 (94-173)||(31313575-31313654)
chr5 (84-167)||(31505575-31505658)
chr5 (85-167)||(31281761-31281843)
chr5 (85-167)||(31475621-31475703)
[»] chr3 (1 HSPs)
chr3 (105-169)||(25708776-25708840)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 31288957 - 31288757
Alignment:
Q  1 aaaacgttactcgagtgtaagagatgggtgatgatcctcccataccatcacctaggcctatcatgggtgaatatggttaatcggaaacctgctccaaaaa 100  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31288957 aaaacattactcaagtgtaagagatgggtgatgatcctcccataccatcacctaggcctatcgtgggtgaatatggttaatcggaaacctgctccaaaaa 31288858  T
Q  101 tgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttcgacaagctgagtgacatgacagcgaag 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31288857 tgaataactgcaatttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttcgacaagctgagtgacatgacagcgaag 31288758  T
Q  201 g 201  Q
    |    
T  31288757 g 31288757  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 31332542 - 31332452
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttcga 175  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||| | ||| |||||| ||||||||||||| |||||||    
T  31332542 aaacctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcga 31332452  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 31407101 - 31407184
Alignment:
Q  84 gaaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    |||||||||||||| ||||| ||| |||||||||||||||| ||||||||  |||||||||||||||||| | |||||||||||    
T  31407101 gaaacctgctccaacaatgactaattgcagtttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatc 31407184  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 31317769 - 31317681
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc 173  Q
    ||||| ||||||| ||| ||||||||||  |||||||||| |||||| || ||||||||||| |||||| |||||||||||||||||||    
T  31317769 aaaccagctccaagaattaataactgcaacttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttc 31317681  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 31381321 - 31381237
Alignment:
Q  91 gctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttcga 175  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||| ||||| | ||| |||||| ||||||||||||| |||||||    
T  31381321 gctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcga 31381237  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 31643559 - 31643642
Alignment:
Q  84 gaaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    |||||| ||||||| |||||||||  ||||||||||||||| |||||| || |||||||||||||||||| | |||||||||||    
T  31643559 gaaacccgctccaagaatgaataagggcagtttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatc 31643642  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 31285128 - 31285050
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaa 163  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||| || ||| | |||||||    
T  31285128 aaacctgctccaacaatgaataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaa 31285050  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 31279164 - 31279249
Alignment:
Q  84 gaaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaa 169  Q
    |||||| ||||||| |||||||||   |||||||||||||| |||||| || |||||||||||||| ||| | |||||||||||||    
T  31279164 gaaaccagctccaagaatgaataataacagtttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaa 31279249  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 40843003 - 40843085
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||  |||  ||||||||||||| ||| | |||||||||||    
T  40843003 aaacctgctccaataatgaataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatc 40843085  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 31363414 - 31363325
Alignment:
Q  84 gaaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc 173  Q
    |||| ||||||||||||||||||| | || | ||||||||| ||| |||| ||||||||||||||| |   ||||||||||||| |||||    
T  31363414 gaaaactgctccaaaaatgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttc 31363325  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 31330337 - 31330253
Alignment:
Q  89 ctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc 173  Q
    ||||||||| ||||||||| | || ||||||||||| |||||||| |||||||||||| || | | |||| |||||||| |||||    
T  31330337 ctgctccaagaatgaataatttcaatttaatcttcatgagttgcatcattagacatcctagaagaaaatatagaagatcgatttc 31330253  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 31379119 - 31379035
Alignment:
Q  89 ctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc 173  Q
    ||||||||| ||||||||| | || ||||||||||| |||||||| |||||||||||| || | | |||| |||||||| |||||    
T  31379119 ctgctccaagaatgaataatttcaatttaatcttcatgagttgcatcattagacatcctagaagaaaatatagaagatcgatttc 31379035  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 31313654 - 31313575
Alignment:
Q  94 ccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc 173  Q
    |||||||||||||| | || | ||||||||| |||||||| ||||||||||||||| | | |||| |||||||| |||||    
T  31313654 ccaaaaatgaataatttcaatgtaatcttcatgagttgcatcattagacatccaagaagaaaatatagaagatcgatttc 31313575  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 31505575 - 31505658
Alignment:
Q  84 gaaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    |||||| ||||||| |||||||||||||| |||||||||||  ||||| || |||| |||||| || ||| | |||||||||||    
T  31505575 gaaaccagctccaacaatgaataactgcaatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatc 31505658  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 31281843 - 31281761
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    ||||| ||||||| |||||||||||||| ||||| ||||| ||||||||| |||| |||||| || |||   |||||||||||    
T  31281843 aaaccagctccaagaatgaataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatc 31281761  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 31475621 - 31475703
Alignment:
Q  85 aaacctgctccaaaaatgaataactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatc 167  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||||  |||  |||||||||| || ||| | |||||||||||    
T  31475621 aaacctgctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatc 31475703  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 25708840 - 25708776
Alignment:
Q  105 taactgcagtttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaa 169  Q
    |||||||| ||| | ||||| ||||||||| |||||||||||||| ||| |||||||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaa 25708776  T

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