View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11416_high_3 (Length: 467)
Name: NF11416_high_3
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11416_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 257 - 449
Target Start/End: Complemental strand, 5127331 - 5127139
Alignment:
| Q |
257 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
356 |
Q |
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| T |
5127331 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
5127232 |
T |
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| Q |
357 |
gacatgaagnnnnnnngactggtgtgagcttgttgacaaattatagttctgaggttgagttgaacggcgatggaatgcgacatagactcaact |
449 |
Q |
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| T |
5127231 |
gatatgaagtttttttgactggtgtgagcttgctgacaaattatagttctgaggttgagttgaacggcgatggaatgcgacatagactcaact |
5127139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 5127489 - 5127348
Alignment:
| Q |
130 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
229 |
Q |
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| T |
5127489 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
5127390 |
T |
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| Q |
230 |
agttgaagttaaggagaacaagattgcagtatattgacatat |
271 |
Q |
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| T |
5127389 |
tgttgaagttaaggagaataagattgcagtatattgacatat |
5127348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5128438 - 5128314
Alignment:
| Q |
1 |
ttgtcctaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaagtcggacaaagtatagtaaaataatgtgtgtagcgtaaattaga |
100 |
Q |
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| T |
5128438 |
ttgtcttaaacttctggtttccaacggggtaatttgaagttcggttaggtggtaaagtcggacaaagtatagtaaaataatgtgtgtagcgtaaattaga |
5128339 |
T |
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| Q |
101 |
gtggttgattatagtgtgcgggaaa |
125 |
Q |
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| T |
5128338 |
gtggttgattatagtgtgcgggaaa |
5128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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