View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11416_high_5 (Length: 271)
Name: NF11416_high_5
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11416_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 1695981 - 1695909
Alignment:
| Q |
143 |
atgaaagaatcaaccttagtataccagctatatttagatcaacgattagtctgacataatcatagtttatcac |
215 |
Q |
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| T |
1695981 |
atgaaagaatcaaccttagtatacctgctatatttagatcaacgatgagtctgacataatcatagtttatcac |
1695909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 1696112 - 1696050
Alignment:
| Q |
21 |
tctttctctgtttattactttgttttggtgtttacgtgaatatagcgtaatttgttatgctat |
83 |
Q |
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| T |
1696112 |
tctttctctgtttattactttgttttggtgtttacgtgaatatagcgtaatttgttatgctat |
1696050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 1685447 - 1685404
Alignment:
| Q |
145 |
gaaagaatcaaccttagtataccagctatatttagatcaacgat |
188 |
Q |
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| T |
1685447 |
gaaagaatcaacctaagtataccagctatatttagatcaacgat |
1685404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 1685563 - 1685520
Alignment:
| Q |
21 |
tctttctctgtttattactttgttttggtgtttacgtgaatata |
64 |
Q |
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| T |
1685563 |
tctttctctatttattactttgttttgttgtttacgtgaatata |
1685520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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