View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11416_low_1 (Length: 731)
Name: NF11416_low_1
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11416_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 20 - 718
Target Start/End: Original strand, 54302285 - 54302985
Alignment:
| Q |
20 |
aagagaactttgaaagagatgaaaagcagaagtccaaatgaaaa--aagttgtaaataatattcacaatttatacaataccacaaaaaggaagagatata |
117 |
Q |
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||||||||| | ||||||||||| | || |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
54302285 |
aagagaactataaaagagatgaacaccaaaagtccaaataaaaaaaaagttgtaaataatattcacaatttatacaataccataaaaaggaagaaatata |
54302384 |
T |
|
| Q |
118 |
tataaatgggattgaaagagagctgtacaaatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataattgaat |
217 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302385 |
tacaaatgggactgaaagagagctgtacaaatgattaactagttcataactcataatgagcatttggactttgaattttattgtttatgtataattgaat |
54302484 |
T |
|
| Q |
218 |
tcctggcaaaatttttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataaggtaga |
317 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54302485 |
tcctggcaaaaaatttggacagtgaactatatacaatttagataataaaacattatccctcctaatttttcaaaccactaatccatatatataaggtaga |
54302584 |
T |
|
| Q |
318 |
gtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaatgtc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54302585 |
gtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtc |
54302684 |
T |
|
| Q |
418 |
ttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54302685 |
ttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatc |
54302784 |
T |
|
| Q |
518 |
tgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngata |
617 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
54302785 |
tgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagata |
54302884 |
T |
|
| Q |
618 |
aacctgtatatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatct |
717 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54302885 |
aacctgtatatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatct |
54302984 |
T |
|
| Q |
718 |
c |
718 |
Q |
| |
|
| |
|
|
| T |
54302985 |
c |
54302985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 54307689 - 54307890
Alignment:
| Q |
20 |
aagagaactttgaaagagatgaaaagcagaagtccaaatgaaaa--aagttgtaaataatattcacaatttatacaataccacaaaaaggaagagatata |
117 |
Q |
| |
|
||||||||| | ||||||||||| | || |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
54307689 |
aagagaactataaaagagatgaacaccaaaagtccaaataaaaaaaaagttgtaaataatattcacaatttatacaataccataaaaaggaagaaatata |
54307788 |
T |
|
| Q |
118 |
tataaatgggattgaaagagagctgtacaaatgattaactagctcataactcataatgagcatttggactttgaattttattgtttatgtataattgaat |
217 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |
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|
| T |
54307789 |
tacaaatgggactgaaagagagctgtacaaatgattaactagttcataactcataatgagcatttggactttgaattttgttgtttatgtacaattaaat |
54307888 |
T |
|
| Q |
218 |
tc |
219 |
Q |
| |
|
|| |
|
|
| T |
54307889 |
tc |
54307890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
472 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
525 |
Q |
| |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
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|
| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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