View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11416_low_10 (Length: 240)

Name: NF11416_low_10
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11416_low_10
NF11416_low_10
[»] chr4 (5 HSPs)
chr4 (72-198)||(46381596-46381722)
chr4 (9-74)||(46382142-46382207)
chr4 (210-240)||(6290455-6290485)
chr4 (211-240)||(33093152-33093181)
chr4 (209-237)||(51717333-51717361)
[»] chr7 (1 HSPs)
chr7 (210-240)||(42276084-42276114)
[»] chr6 (2 HSPs)
chr6 (30-60)||(10849786-10849816)
chr6 (209-237)||(29383549-29383577)
[»] chr3 (2 HSPs)
chr3 (210-240)||(28920098-28920128)
chr3 (212-240)||(53021184-53021212)
[»] chr8 (1 HSPs)
chr8 (211-240)||(36497655-36497684)
[»] chr2 (1 HSPs)
chr2 (207-236)||(43658762-43658791)
[»] chr1 (5 HSPs)
chr1 (160-197)||(41725497-41725534)
chr1 (150-190)||(27666608-27666648)
chr1 (148-184)||(29189642-29189678)
chr1 (209-237)||(29489410-29489438)
chr1 (207-235)||(43196142-43196170)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 46381722 - 46381596
Alignment:
Q  72 taatatgtttatggagctaagaaccgatggtcaactttgcttcgtcagctaaatgaatgtggttggccaaatagaaaggaattctaaaatggtcacaaga 171  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  46381722 taatatgtttatggagctaagaactgatggtcaactttgcttcatcagctaaatgaatacggttggccaaatagaaaggaattctaaaatggtcacaaga 46381623  T
Q  172 ccaaataaataatatttagacacacat 198  Q
    |||||||||||||||||||||||||||    
T  46381622 ccaaataaataatatttagacacacat 46381596  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 46382207 - 46382142
Alignment:
Q  9 tatcatttcagtctcgaaagagaatctataaaaataacttgaaacaaacacatcatagagttgtaa 74  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  46382207 tatcatttcattctcaaaagagaatctacaaaaataacttgaaacaaacacatcatagagctgtaa 46382142  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 6290455 - 6290485
Alignment:
Q  210 tttttaagagaaatgatatttgtacaactat 240  Q
    |||||||||||||||||||||||||||||||    
T  6290455 tttttaagagaaatgatatttgtacaactat 6290485  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 33093181 - 33093152
Alignment:
Q  211 ttttaagagaaatgatatttgtacaactat 240  Q
    ||||||||||||||||||||||||||||||    
T  33093181 ttttaagagaaatgatatttgtacaactat 33093152  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 51717361 - 51717333
Alignment:
Q  209 ttttttaagagaaatgatatttgtacaac 237  Q
    |||||||||||||||||||||||||||||    
T  51717361 ttttttaagagaaatgatatttgtacaac 51717333  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 42276084 - 42276114
Alignment:
Q  210 tttttaagagaaatgatatttgtacaactat 240  Q
    |||||||||||||||||||||||||||||||    
T  42276084 tttttaagagaaatgatatttgtacaactat 42276114  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 10849816 - 10849786
Alignment:
Q  30 gaatctataaaaataacttgaaacaaacaca 60  Q
    |||||||||||||||||||||||||||||||    
T  10849816 gaatctataaaaataacttgaaacaaacaca 10849786  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 29383549 - 29383577
Alignment:
Q  209 ttttttaagagaaatgatatttgtacaac 237  Q
    |||||||||||||||||||||||||||||    
T  29383549 ttttttaagagaaatgatatttgtacaac 29383577  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 28920128 - 28920098
Alignment:
Q  210 tttttaagagaaatgatatttgtacaactat 240  Q
    |||||||||||||||||||||||||||||||    
T  28920128 tttttaagagaaatgatatttgtacaactat 28920098  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 53021184 - 53021212
Alignment:
Q  212 tttaagagaaatgatatttgtacaactat 240  Q
    |||||||||||||||||||||||||||||    
T  53021184 tttaagagaaatgatatttgtacaactat 53021212  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 36497655 - 36497684
Alignment:
Q  211 ttttaagagaaatgatatttgtacaactat 240  Q
    ||||||||||||||||||||||||||||||    
T  36497655 ttttaagagaaatgatatttgtacaactat 36497684  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 43658791 - 43658762
Alignment:
Q  207 tattttttaagagaaatgatatttgtacaa 236  Q
    ||||||||||||||||||||||||||||||    
T  43658791 tattttttaagagaaatgatatttgtacaa 43658762  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 41725497 - 41725534
Alignment:
Q  160 atggtcacaagaccaaataaataatatttagacacaca 197  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  41725497 atggtcacaagaccaaataaatagtatttggacacaca 41725534  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 27666608 - 27666648
Alignment:
Q  150 gaattctaaaatggtcacaagaccaaataaataatatttag 190  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
T  27666608 gaattttaatatggtcacaagaccaaataaatagtatttag 27666648  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 29189642 - 29189678
Alignment:
Q  148 aggaattctaaaatggtcacaagaccaaataaataat 184  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  29189642 aggaattctaatatggtcacaagactaaataaataat 29189678  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 29489438 - 29489410
Alignment:
Q  209 ttttttaagagaaatgatatttgtacaac 237  Q
    |||||||||||||||||||||||||||||    
T  29489438 ttttttaagagaaatgatatttgtacaac 29489410  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 43196170 - 43196142
Alignment:
Q  207 tattttttaagagaaatgatatttgtaca 235  Q
    |||||||||||||||||||||||||||||    
T  43196170 tattttttaagagaaatgatatttgtaca 43196142  T

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