View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11416_low_2 (Length: 664)
Name: NF11416_low_2
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11416_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 23 - 650
Target Start/End: Complemental strand, 10011948 - 10011331
Alignment:
| Q |
23 |
agctcttccctccttaattaattgaatgaagtgtcttggaatgacaaaactctaagccttcccactcagaatttatttcggtatattttccatgcaccta |
122 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011948 |
agctcttccctccttaattaattgaatgaagtatcttggaatgacaaaactctaagccttcccactcagaatttatttcggtatattttccatgcaccta |
10011849 |
T |
|
| Q |
123 |
ggtacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagcaaacactcaatacattcaaaaaccgtttatattctccatgg |
222 |
Q |
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| T |
10011848 |
gatacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacaatcaatacatccaaaaaccatttatattctccatgg |
10011749 |
T |
|
| Q |
223 |
ctcacatataaaccttcagacgtt--tttcttaccacaattaataatgtaccttggtgtactatatggaaaacatgcaactgatctatttcccacgtatg |
320 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
10011748 |
ctcacatatagaccttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaaaacatgcagctgatctatttcccacgcatg |
10011650 |
T |
|
| Q |
321 |
ttcacacactaaaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttcccttggttcaaca |
420 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10011649 |
ttcacacactaaaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttcccttggttcaaca |
10011550 |
T |
|
| Q |
421 |
acacagcatccatccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaaccttcttcaacaacgaaatttacgacatgt |
520 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
10011549 |
gcacagtatccatccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttca----------tcaacaacgaaatttacgacatgt |
10011460 |
T |
|
| Q |
521 |
tttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtggtagtgttcta |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10011459 |
tttggatcgattcaatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctctttgttgtccaaatccaagctctgtggtggtgttcta |
10011360 |
T |
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| Q |
621 |
nnnnnnnnactgatatgaatttgatgtcca |
650 |
Q |
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|||||||||||||||||||||| |
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| T |
10011359 |
-tttttttactgatatgaatttgatgtcca |
10011331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 39076201 - 39076149
Alignment:
| Q |
77 |
agccttcccactcagaatttatttcggtatattttccatgcacctaggtacac |
129 |
Q |
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||||||| |||||||||||||| | ||| | |||||||||||||||||||||| |
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| T |
39076201 |
agccttctcactcagaatttatgttggtttgttttccatgcacctaggtacac |
39076149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 13761887 - 13761938
Alignment:
| Q |
77 |
agccttcccactcagaatttatttcggtatattttccatgcacctaggtaca |
128 |
Q |
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|||||||||||||||||||||| | ||| ||||||||||||||||||||| |
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| T |
13761887 |
agccttcccactcagaatttatattggtcggttttccatgcacctaggtaca |
13761938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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