View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11416_low_4 (Length: 426)

Name: NF11416_low_4
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11416_low_4
NF11416_low_4
[»] chr2 (4 HSPs)
chr2 (122-233)||(41753651-41753762)
chr2 (263-350)||(41753536-41753623)
chr2 (122-230)||(5787764-5787872)
chr2 (276-310)||(6467552-6467586)
[»] chr8 (10 HSPs)
chr8 (123-233)||(13757054-13757164)
chr8 (122-233)||(37364834-37364945)
chr8 (130-233)||(23141283-23141386)
chr8 (263-350)||(13757191-13757278)
chr8 (263-350)||(23141167-23141254)
chr8 (263-350)||(37364719-37364806)
chr8 (122-181)||(42796825-42796884)
chr8 (276-325)||(21587637-21587686)
chr8 (283-334)||(10900322-10900373)
chr8 (123-226)||(21587748-21587850)
[»] chr6 (4 HSPs)
chr6 (122-233)||(1600169-1600280)
chr6 (263-350)||(1600307-1600394)
chr6 (122-233)||(4850945-4851056)
chr6 (263-350)||(4851084-4851171)
[»] chr7 (2 HSPs)
chr7 (122-233)||(12978117-12978228)
chr7 (263-348)||(12978257-12978342)
[»] chr3 (7 HSPs)
chr3 (122-213)||(50331501-50331592)
chr3 (263-349)||(50331374-50331460)
chr3 (122-230)||(12745441-12745550)
chr3 (123-230)||(36097176-36097283)
chr3 (276-325)||(36097340-36097389)
chr3 (157-227)||(29195977-29196048)
chr3 (276-325)||(12745325-12745374)
[»] scaffold0036 (1 HSPs)
scaffold0036 (122-230)||(49115-49224)
[»] chr5 (3 HSPs)
chr5 (122-230)||(33012824-33012933)
chr5 (124-215)||(38012566-38012658)
chr5 (276-325)||(33012718-33012767)
[»] chr4 (8 HSPs)
chr4 (122-230)||(282998-283107)
chr4 (278-350)||(13668468-13668540)
chr4 (278-350)||(13681325-13681397)
chr4 (276-325)||(283164-283213)
chr4 (276-325)||(39976089-39976138)
chr4 (123-230)||(39975920-39976027)
chr4 (122-188)||(13230457-13230522)
chr4 (278-325)||(13230621-13230668)
[»] chr1 (1 HSPs)
chr1 (276-334)||(43386037-43386095)
[»] scaffold0380 (1 HSPs)
scaffold0380 (123-184)||(15571-15632)
[»] scaffold0159 (1 HSPs)
scaffold0159 (122-230)||(32137-32245)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 41753762 - 41753651
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41753762 ccaacctttattatgtaaaataccttcacttttgctttttggtgggatctaacaatgaaaaaatgcatgtttttgctgagttgacaaagcgacactttaa 41753663  T
Q  222 aattatgtgtca 233  Q
    ||| ||||||||    
T  41753662 aatcatgtgtca 41753651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 41753623 - 41753536
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41753623 gggtagaatgaatactcgttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacggacaaaacaatcacta 41753536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 5787872 - 5787764
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||||||||||||  |||||||  |||||||| ||||||||||| ||| |||||||||||||||||| || ||||   |||||||| || ||||| ||||    
T  5787872 ccaacctctattat-taaaatacattcactttcgctttttggtgagatataacaatgaaaaaatgcatgtgttttaaggagttgacgaaacgacatttta 5787774  T
Q  221 aaattatgtg 230  Q
    || |||||||    
T  5787773 aatttatgtg 5787764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 6467552 - 6467586
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataact 310  Q
    |||||||||||||| ||||||||||||||||||||    
T  6467552 actccttcaactaacccataaaattaccaataact 6467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 13757054 - 13757164
Alignment:
Q  123 caacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaaa 222  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  13757054 caacctctattatgtaaaataccttcacttttgctttttggtgggatctaacaatgaaaaaatgtatgtttttgctgagttgacaaagcgacactttaaa 13757153  T
Q  223 attatgtgtca 233  Q
    || ||||||||    
T  13757154 atcatgtgtca 13757164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 37364945 - 37364834
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37364945 ccaacctctattatgtaaaataccttcacttttgctttttggtgtgatctaacaatgaaaaaatgcatgtttttgctgagttgacaaagcgacactttaa 37364846  T
Q  222 aattatgtgtca 233  Q
    |||  |||||||    
T  37364845 aatcttgtgtca 37364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 23141386 - 23141283
Alignment:
Q  130 tattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaaaattatgt 229  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  23141386 tattatgtaaaataccttcacttttgctttttggtaggatctaacaatgaaaaaatgcatgtttttgctgagttgacaaagcgacactttaaaatcatgt 23141287  T
Q  230 gtca 233  Q
    ||||    
T  23141286 gtca 23141283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 13757191 - 13757278
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13757191 gggtagaatgaatactccttcaactaaaccataaaataaccaataactcgctctattttcaatgtttccacggacaaaacaatcacta 13757278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 23141254 - 23141167
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23141254 gggtagaatcaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacggacaaaacaatcacta 23141167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 350
Target Start/End: Complemental strand, 37364806 - 37364719
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  37364806 gggtagaaagaatactccttcaattaaaccataaaattaccaataactcgctttattttcaatgtttccacggacaaaacaatcacta 37364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 42796884 - 42796825
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaa 181  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  42796884 ccaacctctattatgtaaaataccttcacttttgctttttggtgtgatctaacaatgaaa 42796825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 21587686 - 21587637
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  21587686 actccttcaactaaaccataaaattaccaataactcactttattttcaat 21587637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 10900373 - 10900322
Alignment:
Q  283 caactaaaccataaaattaccaataactcgctctattttcaatgtttccacg 334  Q
    |||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  10900373 caactaaaccataaaattaccaataactcgatctattttcaatacttccacg 10900322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 21587850 - 21587748
Alignment:
Q  123 caacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||||||||  ||||||   |||||||||||| |||||  ||||||||| ||||||||||||| || |||||| | ||||||||| ||| | |||||    
T  21587850 caacctctattatttaaaattctttcacttttgctctttgg--ggatctaacgatgaaaaaatgcatgtgttttgccgtgttgacaaaacgatattttaa 21587753  T
Q  222 aatta 226  Q
    |||||    
T  21587752 aatta 21587748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 1600169 - 1600280
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  1600169 ccaacctctattatgtaaaataccttcacttttgctttttggtgggatctcacaattaaaaaatgcatgtttttgctgagttgacaaagcgacactttaa 1600268  T
Q  222 aattatgtgtca 233  Q
    ||| ||||||||    
T  1600269 aatcatgtgtca 1600280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 1600307 - 1600394
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1600307 gggtagaatgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacggacaaaacaatcacta 1600394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 4850945 - 4851056
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||| |||||  ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  4850945 ccaacctttattatataaaatacctttacttttgctttttggtgggatctaacaatgaaaaaatgcatgtttttgttgatttgacaaaacgacactttaa 4851044  T
Q  222 aattatgtgtca 233  Q
    |||  |||||||    
T  4851045 aatcgtgtgtca 4851056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 350
Target Start/End: Original strand, 4851084 - 4851171
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  4851084 gggtagaatgaatagtccttcaactaaatcataaaattaccaataactccctctattttcaatgtttccacggataaaacaatcacta 4851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 12978117 - 12978228
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  12978117 ccaacctttattatataaaatatcttcacttttgttttttggtgggatctaacaatgaaaaaatgcgtgtttttgctgagttgacaaagcgacactttaa 12978216  T
Q  222 aattatgtgtca 233  Q
    ||| ||||||||    
T  12978217 aatcatgtgtca 12978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 12978257 - 12978342
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcac 348  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  12978257 gggtagaatgaatagtccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacggataaaacaatcac 12978342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 50331592 - 50331501
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggtttttgctgagttgacaaagcga 213  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50331592 ccaacttctattatgtaaaataccttcacttttgctttttggtgggatctaacaatgaaaaaatgcatgtttttgctgagttgacaaagcga 50331501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 50331460 - 50331374
Alignment:
Q  263 gggtagactgaatactccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcact 349  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50331460 gggtagaatgaatacttcttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacggacaaaacaatcact 50331374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 12745550 - 12745441
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||||||||||||| ||||||| |||| |||||||| ||| | |||||||| |||| ||||||  || || |||||||||||||||||| ||| | ||||    
T  12745550 ccaacctctattacttaaaataccttcccttttgctctttagggggatctagcaataaaaaaaatcatgtgttttgctgagttgacaaaacgatatttta 12745451  T
Q  221 aaattatgtg 230  Q
    ||||||||||    
T  12745450 aaattatgtg 12745441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 36097176 - 36097283
Alignment:
Q  123 caacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacactttaa 221  Q
    |||||||| |||  ||||||  |||||||||| || ||||| |||||||||||||||||||||||| || |||||| ||||||||||| ||| | |||||    
T  36097176 caacctctgttatttaaaattccttcacttttactctttgg-gggatctaacaatgaaaaaatgcatgtgttttgccgagttgacaaaacgatattttaa 36097274  T
Q  222 aattatgtg 230  Q
    |||||||||    
T  36097275 aattatgtg 36097283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 36097340 - 36097389
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  36097340 actccttcaactaaaccataaaattaccaataactcactttattttcaat 36097389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 29195977 - 29196048
Alignment:
Q  157 tttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacactttaaaattat 227  Q
    |||||||||||||||||||||||||||||||| || ||||  |||||||||||||  ||| |||||||||||    
T  29195977 tttttggtgggatctaacaatgaaaaaatgcatgtgttttaatgagttgacaaaggaacattttaaaattat 29196048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 12745374 - 12745325
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    |||||||||||||| |||||||||||||||||| || || ||||||||||    
T  12745374 actccttcaactaagccataaaattaccaataattcactttattttcaat 12745325  T

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Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 49224 - 49115
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||| ||||||||  |||||||  ||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||| ||||||| ||||    
T  49224 ccaaactctattatttaaaatacattcacttttgctttttggtggaatctaacaatgaaaaagtgcatgtgttttgctgagttgacatagcgacatttta 49125  T
Q  221 aaattatgtg 230  Q
    ||||||||||    
T  49124 aaattatgtg 49115  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 33012933 - 33012824
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||||||||||||  ||||||| ||||||||||||| ||||  |||||||||||||||||||||||| || |||||| || |||||||| ||| | ||||    
T  33012933 ccaacctctattatttaaaataccttcacttttgctctttgcggggatctaacaatgaaaaaatgcatgtgttttgccgaattgacaaaacgatatttta 33012834  T
Q  221 aaattatgtg 230  Q
    ||||||||||    
T  33012833 aaattatgtg 33012824  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 38012658 - 38012566
Alignment:
Q  124 aacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgaca 215  Q
    |||||||||||  |||||||  ||||||||||||||||||||||| ||||||||| ||||||||| || ||||| ||||||||||||| ||||    
T  38012658 aacctctattatttaaaatacattcacttttgctttttggtgggaactaacaatggaaaaatgcatgtgttttgatgagttgacaaagtgaca 38012566  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 33012767 - 33012718
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    ||||||||||||||||||||||| ||| |||||||| || ||||||||||    
T  33012767 actccttcaactaaaccataaaactactaataactcactttattttcaat 33012718  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 282998 - 283107
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||||||||||||  ||||||| ||||||||||||| ||||  |||||||||||||||||||||||| || |||||| || |||||||| ||| | ||||    
T  282998 ccaacctctattatttaaaataccttcacttttgctctttgcggggatctaacaatgaaaaaatgcatgtgttttgccgaattgacaaaacgatatttta 283097  T
Q  221 aaattatgtg 230  Q
    ||||||||||    
T  283098 aaattatgtg 283107  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 13668540 - 13668468
Alignment:
Q  278 tccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||  |||||||| ||||||    
T  13668540 tccttcaactaaaccataaaattatcaataactccctctattttcaatacttccacccacaaaacactcacta 13668468  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 13681397 - 13681325
Alignment:
Q  278 tccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacgaacaaaacaatcacta 350  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  ||||||  |||||||| ||||||    
T  13681397 tccttcaactaaaccataaaattatcaataactccctctattttcaatacttccacccacaaaacactcacta 13681325  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 283164 - 283213
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  283164 actccttcaactaaaccataaaactaccaataactcgctttattttcaat 283213  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 39976089 - 39976138
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  39976089 actccttcaactaaaccataaaattaccaataactcactttattttcaat 39976138  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 39975920 - 39976027
Alignment:
Q  123 caacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacactttaa 221  Q
    ||||||||||||  ||||||   |||||||||||| ||||| | ||||||||||| |||||||||| || |||||| ||||||||||| ||| | |||||    
T  39975920 caacctctattatttaaaattctttcacttttgctctttgg-gagatctaacaataaaaaaatgcatgtgttttgccgagttgacaaaacgatattttaa 39976018  T
Q  222 aattatgtg 230  Q
    |||||||||    
T  39976019 aattatgtg 39976027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 13230457 - 13230522
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgca 188  Q
    |||||||||||||  |||||||  |||||||| |||||||| || ||||||||||||||||||||||    
T  13230457 ccaacctctattatttaaaatacattcactttcgctttttg-tgagatctaacaatgaaaaaatgca 13230522  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 13230621 - 13230668
Alignment:
Q  278 tccttcaactaaaccataaaattaccaataactcgctctattttcaat 325  Q
    |||| |||||||||||||||||||||| |||||| | |||||||||||    
T  13230621 tcctacaactaaaccataaaattaccagtaactcacactattttcaat 13230668  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 43386095 - 43386037
Alignment:
Q  276 actccttcaactaaaccataaaattaccaataactcgctctattttcaatgtttccacg 334  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||||  |||||||    
T  43386095 actcctgcaactaaaccataaaattaccaataactggatctattttcaatacttccacg 43386037  T

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Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 15571 - 15632
Alignment:
Q  123 caacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaa 184  Q
    ||||||||||||  ||||| | ||| |||||||||||||||||| |||||||||||||||||    
T  15571 caacctctattatttaaaacaccttgacttttgctttttggtggaatctaacaatgaaaaaa 15632  T

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Target: scaffold0159 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 32245 - 32137
Alignment:
Q  122 ccaacctctattacgtaaaatatcttcacttttgctttttggtgggatctaacaatgaaaaaatgcaggt-ttttgctgagttgacaaagcgacacttta 220  Q
    |||||||||||||  |||||||  |||||||| ||||||||||| ||| |||||||||||||||||| || ||||   |||||||| || ||||| ||||    
T  32245 ccaacctctattat-taaaatacattcactttcgctttttggtgagatataacaatgaaaaaatgcatgtgttttaaggagttgacgaaacgacatttta 32147  T
Q  221 aaattatgtg 230  Q
    || |||||||    
T  32146 aatttatgtg 32137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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