View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11416_low_8 (Length: 255)
Name: NF11416_low_8
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11416_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 30826870 - 30827025
Alignment:
| Q |
100 |
attaagcatacgcaacacacggactagtggttcagtgagtttcactatatcagcagatttactccagaatccagaatctaaaacatcctccacagannnn |
199 |
Q |
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| T |
30826870 |
attaaccatacgcaacacacggactagtggttcagtgagtttcactatatcggcagatttactccagaatccagaatctaaaacgtcctccacaaatttt |
30826969 |
T |
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| Q |
200 |
nnnncctttacttctctggcatatgctgaggttgtccattcattagatgttaccat |
255 |
Q |
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| T |
30826970 |
tttgcctttacttctctggcatatgctgaggttgtccattcattagatgttaccat |
30827025 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 30826151 - 30826239
Alignment:
| Q |
18 |
aagacaaataaatggttaaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc |
106 |
Q |
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| T |
30826151 |
aagacaaataaatggttaaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc |
30826239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 51600837 - 51600882
Alignment:
| Q |
109 |
acgcaacacacggactagtggttcagtgagtttcactatatcagca |
154 |
Q |
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| T |
51600837 |
acgcaacacacgtacaagtggttctgtgagtttcactatgtcagca |
51600882 |
T |
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