View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11416_low_9 (Length: 250)

Name: NF11416_low_9
Description: NF11416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11416_low_9
NF11416_low_9
[»] chr1 (10 HSPs)
chr1 (1-244)||(30827130-30827372)
chr1 (177-244)||(33160702-33160769)
chr1 (176-244)||(29658799-29658867)
chr1 (176-244)||(29691314-29691382)
chr1 (176-244)||(29718826-29718894)
chr1 (88-170)||(29659026-29659108)
chr1 (183-240)||(19468340-19468397)
chr1 (187-243)||(9581276-9581332)
chr1 (187-243)||(9586844-9586900)
chr1 (102-170)||(29719053-29719121)
[»] chr6 (1 HSPs)
chr6 (182-241)||(6594446-6594505)
[»] chr4 (3 HSPs)
chr4 (174-242)||(10634273-10634341)
chr4 (180-239)||(55908567-55908626)
chr4 (176-240)||(570542-570606)
[»] chr2 (1 HSPs)
chr2 (180-239)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 30827130 - 30827372
Alignment:
Q  1 caaggcataacaaatgattataaagatatttggtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaa 100  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827130 caaggcataacaa-tgattataaagatatttagtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaa 30827228  T
Q  101 gatctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacatcagtacaatagctcaaatcaagcacctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30827229 gatctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacatccgtacaatagctcaaatcaagcacctcca 30827328  T
Q  201 aattggggaaaatagaagtaaacaataggatgttttcatctctc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30827329 aattggggaaaatagaagtaaacaataggatgttttcatctctc 30827372  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 33160702 - 33160769
Alignment:
Q  177 aatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctc 244  Q
    |||||||||||||||||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||    
T  33160702 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctc 33160769  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 29658867 - 29658799
Alignment:
Q  176 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctc 244  Q
    |||||||||||||||||||| ||||| ||||||||||| |||| |||||||| |||||||| |||||||    
T  29658867 caatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctc 29658799  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 29691382 - 29691314
Alignment:
Q  176 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctc 244  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||| |||||||    
T  29691382 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctc 29691314  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 29718894 - 29718826
Alignment:
Q  176 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctc 244  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||| |||||||    
T  29718894 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctc 29718826  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 29659108 - 29659026
Alignment:
Q  88 cacttgatcacaagatctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacat 170  Q
    ||||||||||||| |||||| |||||||||  | ||||| ||||| |||||||| ||||| ||  |||| |||||||||||||    
T  29659108 cacttgatcacaatatctcaaattgatctcagtcagttgcgtgcagttttgaaccacatgttttactccattctctgtgacat 29659026  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  183 tcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatc 240  Q
    |||||||||||| || ||||||||| ||||| |||| ||||| || ||||||||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 9581276 - 9581332
Alignment:
Q  187 atcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctct 243  Q
    |||||||| || ||||||||||||||| |||| ||||| || |||||||| ||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9581332  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 9586844 - 9586900
Alignment:
Q  187 atcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctct 243  Q
    |||||||| || ||||||||||||||| |||| ||||| || |||||||| ||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9586900  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 29719121 - 29719053
Alignment:
Q  102 atctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacat 170  Q
    |||||| |||||||||| | |||||  |||| |||||||| ||||| ||| |||| |||||||||||||    
T  29719121 atctcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacat 29719053  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 6594505 - 6594446
Alignment:
Q  182 ctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatct 241  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatct 6594446  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 10634341 - 10634273
Alignment:
Q  174 tacaatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctc 242  Q
    ||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||| | ||||| ||||||||    
T  10634341 tacaataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctc 10634273  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 55908626 - 55908567
Alignment:
Q  180 agctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcat 239  Q
    ||||||||||||| |  | ||||||||||||||| |||| |||||||| |||||||||||    
T  55908626 agctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 55908567  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 570542 - 570606
Alignment:
Q  176 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatc 240  Q
    ||||| || |||||||| | || |||||||||||||||||||| ||||| ||  |||||||||||    
T  570542 caataacttaaatcaagtatctgcaaattggggaaaatagaagcaaacattaaaatgttttcatc 570606  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 1037562 - 1037503
Alignment:
Q  180 agctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcat 239  Q
    ||||||||||||| |  | ||||||||||||||| |||| |||||||| |||||||||||    
T  1037562 agctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 1037503  T

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