View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11417_high_1 (Length: 660)
Name: NF11417_high_1
Description: NF11417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11417_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Original strand, 35314533 - 35314977
Alignment:
| Q |
23 |
aatgtcatgcatgtttaactgcatcagaactgtaggtgatctgtgttgaaccagaactgtccttactgttcctcatgagctgtattgacttcattattgg |
122 |
Q |
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| T |
35314533 |
aatgtcatgcatgtttaactgcatcagaactgtgggtgatctgtgttgaaccagaactgtccttactgttcctcatgagttgtattgacttcattattgg |
35314632 |
T |
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| Q |
123 |
actgttcagctcctgcgttattatgggaagtgttggagttgccttcattctgtacaaaggttaaataaaggagttgtcaatgcaacctagataatccact |
222 |
Q |
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| T |
35314633 |
actgttcagctcctgcgttattatgggaagtgttggagttgccttcattctgtacaaaggttaaataaaggagttgtcaatgcaacctaaataatccact |
35314732 |
T |
|
| Q |
223 |
taaaagctagaatatatcccaaaacttgagcacacatccgatgcaaccctgcctctttctcttttcattggtgagatgtaagggagggtaaacaaatcac |
322 |
Q |
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| T |
35314733 |
taaaagctagaatatatcccaaaacttgagcacacatccgatgcaaccctgcctctttctcttttcattggtgagatgtaagggagggtaaacaaatcac |
35314832 |
T |
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| Q |
323 |
aacgagtaacggaattcaggcctttaaacaagtcatatttttcgtgagatatactttaaatttgggctagtatgttaaagaaaaactttagcatttattc |
422 |
Q |
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| T |
35314833 |
aacaagtaacggaaatcaggcctttaaacaagtcatatttttcgtgagatatactttaaatttgggctagtatgttaaagaaaaactttagcatttattc |
35314932 |
T |
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| Q |
423 |
tgtagaataagagataaactttacttatcatcactccacccctcc |
467 |
Q |
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| T |
35314933 |
tgtagaataagagataaactttacttatcatcactccacccctcc |
35314977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 491 - 650
Target Start/End: Original strand, 35315000 - 35315159
Alignment:
| Q |
491 |
gaggtaaaccacctcataaaattatcacttgaggagaaactcatttattgttcatcatcattcaaacgtttagtaattaatgatgtataagaacagtgca |
590 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35315000 |
gaggtaaaccacctcataaaattatcagttgaggagaaactcatttattgttcatcatcattcaaacgtttagtaactaatgatgtataagaacagtgca |
35315099 |
T |
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| Q |
591 |
tttaatgaattatgcaattcaaatatttcaaattttcaatcgccagccacctatgcttct |
650 |
Q |
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| T |
35315100 |
tttaatgaattatgcaattcaaatatttcaaattttcaatcgccagccacctatgattct |
35315159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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