View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11417_high_2 (Length: 355)
Name: NF11417_high_2
Description: NF11417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11417_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 35314533 - 35314876
Alignment:
| Q |
5 |
aatgtcatgcatgtttaactgcatcagaactgtaggtgatctgtgttgaaccagaactgtccttactgttcctcatgagctgtattgacttcattattgg |
104 |
Q |
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| T |
35314533 |
aatgtcatgcatgtttaactgcatcagaactgtgggtgatctgtgttgaaccagaactgtccttactgttcctcatgagttgtattgacttcattattgg |
35314632 |
T |
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| Q |
105 |
actgttcagctcctgcgttattatgggaagtgttggagttgccttcattctgtataaaggttaaataaaggagttgtcaatgcaacctagataatccact |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35314633 |
actgttcagctcctgcgttattatgggaagtgttggagttgccttcattctgtacaaaggttaaataaaggagttgtcaatgcaacctaaataatccact |
35314732 |
T |
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| Q |
205 |
taaaagctagaatatatcccaaaacttgagcacacatccgatgcaaccctgcctctttctcttttcattggtgagatgtaagggagggtaaacaaatcac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35314733 |
taaaagctagaatatatcccaaaacttgagcacacatccgatgcaaccctgcctctttctcttttcattggtgagatgtaagggagggtaaacaaatcac |
35314832 |
T |
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| Q |
305 |
aacgagtaacggaattcaggcctttaaacaagtcatatttttcg |
348 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
35314833 |
aacaagtaacggaaatcaggcctttaaacaagtcatatttttcg |
35314876 |
T |
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