View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11417_high_8 (Length: 304)
Name: NF11417_high_8
Description: NF11417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11417_high_8 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 36357424 - 36357135
Alignment:
| Q |
12 |
aatacttaatattgtaagaaatataaaataatgaatgaccctatagtcttaccatgaaataatattattagtatttataagattgatgttattacatcac |
111 |
Q |
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| T |
36357424 |
aatacttaatattgtaagaaatataaaataatgaatgaccttatagtcttaccatgaaataatattattagtatttataagattgatgttattacatcac |
36357325 |
T |
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| Q |
112 |
acataattaatgtaactctctctcgagataatcataattctcaaactttgtatttgtccatcatttccttcgtcaatttaaattggtgtcacaattttct |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357324 |
acataattaatgtaactc--tctcgagataatcataattctcaaactttgtatttgtccatcatttccttcgtcaatttaaattggtgtcacaattttct |
36357227 |
T |
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| Q |
212 |
atttttggatgtcaca----ataagtagnnnnnnnntatataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaa |
300 |
Q |
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| T |
36357226 |
ttttttggatgtcacaatatataagtag-aaaaaaatatataaatgacacaaatcttaaataacaataaaattgtctcattgaaatgattcaa |
36357135 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 39659629 - 39659685
Alignment:
| Q |
245 |
atataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaac |
301 |
Q |
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| T |
39659629 |
atataaatgacagaaatcctaaacaaaaataaaattgtcaagttgaaatgattcaac |
39659685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 2536 - 2592
Alignment:
| Q |
245 |
atataaatgacacaaatcttaaataacaataaaattgtctcgttgaaatgattcaac |
301 |
Q |
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| T |
2536 |
atataaatgactgaaatcctaaataataacaaaattgcctcgttgaaataattcaac |
2592 |
T |
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