View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11418_high_3 (Length: 440)

Name: NF11418_high_3
Description: NF11418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11418_high_3
NF11418_high_3
[»] chr4 (3 HSPs)
chr4 (15-434)||(34621676-34622092)
chr4 (235-297)||(49219128-49219190)
chr4 (167-204)||(41162203-41162240)
[»] chr1 (3 HSPs)
chr1 (235-297)||(12564893-12564955)
chr1 (160-195)||(6933118-6933153)
chr1 (254-317)||(47020515-47020579)
[»] chr5 (4 HSPs)
chr5 (235-319)||(21768193-21768278)
chr5 (165-204)||(14257346-14257385)
chr5 (164-202)||(30845201-30845239)
chr5 (165-205)||(11095603-11095643)
[»] chr8 (2 HSPs)
chr8 (160-195)||(31167861-31167896)
chr8 (158-203)||(7026605-7026650)
[»] chr7 (3 HSPs)
chr7 (160-195)||(31691271-31691306)
chr7 (235-297)||(10190784-10190846)
chr7 (237-297)||(44151499-44151559)
[»] chr2 (1 HSPs)
chr2 (160-195)||(6772696-6772731)
[»] chr6 (4 HSPs)
chr6 (165-206)||(30865355-30865396)
chr6 (235-271)||(2112189-2112225)
chr6 (236-319)||(3168257-3168341)
chr6 (235-287)||(28660789-28660841)
[»] scaffold0024 (1 HSPs)
scaffold0024 (235-271)||(27565-27601)
[»] chr3 (3 HSPs)
chr3 (160-204)||(2201000-2201044)
chr3 (163-195)||(4534500-4534532)
chr3 (235-291)||(47904088-47904144)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 34621676 - 34622092
Alignment:
Q  15 aacactattagtacattatactcttccaaccaggatccacacctctcatgttaaaattcactattcactatggtgtgaaaattgtgtacattttatattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  34621676 aacactattagtacattatactcttccaaccaggatccacacctctcatgttaaaattcactat-------ggtgtgaaaattgtgtacattttatattt 34621768  T
Q  115 atatccaatgatgta-aaaactgtgagtatcttttatctccaacacgactctgtttggataaacaacttaactaagcacttacaacataagttatttcta 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34621769 atatccaatgatgtataaaactgtgagtatcttttatctccaacatgactctgtttggataaacaacttaactaaacacttacaacataagttatttcta 34621868  T
Q  214 caacaaaagctataagctacattcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaacagtccatggacatgt 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34621869 caacaaaagctataagctacagtcatataaactataaattgttttcataacgtatctttacgagcttacggaaataagttgaaacagtccatggacatgt 34621968  T
Q  314 cataagtaaacaaactcaaata-------------aagtcatagactcctatcaacatttgtaaacatttaccaaagagaaaaagaataaagaacgaatg 400  Q
    ||||||||||||||||||||||             ||||||||||||||| ||| ||||||||||||||||||||| ||| ||         ||||||||    
T  34621969 cataagtaaacaaactcaaataaatcaatccaaacaagtcatagactcctgtcagcatttgtaaacatttaccaaa-agagaa---------aacgaatg 34622058  T
Q  401 attgaaattagacaaataagacattacatcatcc 434  Q
    ||||||||||||||||||||||||||||||||||    
T  34622059 attgaaattagacaaataagacattacatcatcc 34622092  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 49219128 - 49219190
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 297  Q
    ||||||||| |||||| |||||||||||| ||||||| | ||| ||| ||||||||| |||||    
T  49219128 ttcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaa 49219190  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 41162240 - 41162203
Alignment:
Q  167 tttggataaacaacttaactaagcacttacaacataag 204  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  41162240 tttggataaacaacttaattaagcacttataacataag 41162203  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 12564955 - 12564893
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 297  Q
    ||||||||| |||||| |||||||||||| ||||||||  | ||||||||||||||| |||||    
T  12564955 ttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaa 12564893  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 6933153 - 6933118
Alignment:
Q  160 gactctgtttggataaacaacttaactaagcactta 195  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6933153 gactctgtttggataaacaacttaattaagcactta 6933118  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 47020515 - 47020579
Alignment:
Q  254 gttttcataacctatctttacgagcttacggaaataagttg-aaacagtccatggacatgtcata 317  Q
    |||||||||| |||||||   |||||||||||||||||||| ||||||   ||||||||||||||    
T  47020515 gttttcataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtcata 47020579  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 21768278 - 21768193
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttg-aaacagtccatggacatgtcataag 319  Q
    |||||||||||| |||  |||||||||||  |||||| | ||||||||| |||||||||| ||||||   ||||||||||||||||    
T  21768278 ttcatataaactttaagctgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataag 21768193  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 14257346 - 14257385
Alignment:
Q  165 tgtttggataaacaacttaactaagcacttacaacataag 204  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttataacataag 14257385  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 30845201 - 30845239
Alignment:
Q  164 ctgtttggataaacaacttaactaagcacttacaacata 202  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttataacata 30845239  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 11095643 - 11095603
Alignment:
Q  165 tgtttggataaacaacttaactaagcacttacaacataagt 205  Q
    |||||||||||||||||||||||| ||||||| | ||||||    
T  11095643 tgtttggataaacaacttaactaaacacttaccatataagt 11095603  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 31167861 - 31167896
Alignment:
Q  160 gactctgtttggataaacaacttaactaagcactta 195  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31167861 gactctgtttggataaacaacttaattaagcactta 31167896  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 7026605 - 7026650
Alignment:
Q  158 acgactctgtttggataaacaacttaactaagcacttacaacataa 203  Q
    ||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  7026605 acgaccctgtttggataaacaacttaattaagcatttacagcataa 7026650  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 31691306 - 31691271
Alignment:
Q  160 gactctgtttggataaacaacttaactaagcactta 195  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31691306 gactctgtttggataaacaacttaattaagcactta 31691271  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 10190784 - 10190846
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 297  Q
    |||||||||||| |||||||||||||||| ||||  |||  |||||| ||||||| |||||||    
T  10190784 ttcatataaactgtaaattgttttcataaactattcttaaaagcttatggaaatacgttgaaa 10190846  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 44151559 - 44151499
Alignment:
Q  237 catataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 297  Q
    ||||||| |||||| |||||||||||| ||||||| |  |||||| ||||||||| |||||    
T  44151559 catataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaa 44151499  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 6772731 - 6772696
Alignment:
Q  160 gactctgtttggataaacaacttaactaagcactta 195  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6772731 gactctgtttggataaacaacttaattaagcactta 6772696  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 30865355 - 30865396
Alignment:
Q  165 tgtttggataaacaacttaactaagcacttacaacataagtt 206  Q
    |||||||||||||||||||| |||||| ||| ||||||||||    
T  30865355 tgtttggataaacaacttaattaagcatttataacataagtt 30865396  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 2112189 - 2112225
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctt 271  Q
    |||||||||||||||| |||||||||||| |||||||    
T  2112189 ttcatataaactataagttgttttcataaactatctt 2112225  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 3168341 - 3168257
Alignment:
Q  236 tcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa-cagtccatggacatgtcataag 319  Q
    |||||||| ||||||| ||||||| ||| ||||| |   ||||||| ||||||||| ||||| ||| | ||||||||||||||||    
T  3168341 tcatataagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 3168257  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 28660841 - 28660789
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaa 287  Q
    |||||||||| |||||||||||||||||| ||||| |||  |||||| |||||    
T  28660841 ttcatataaattataaattgttttcataaactatccttaaaagcttatggaaa 28660789  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 27565 - 27601
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctt 271  Q
    |||||||||||||||| |||||||||||| |||||||    
T  27565 ttcatataaactataagttgttttcataaactatctt 27601  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 2201000 - 2201044
Alignment:
Q  160 gactctgtttggataaacaacttaactaagcacttacaacataag 204  Q
    ||||||||| ||||||||||||||||||||| |||| | ||||||    
T  2201000 gactctgttaggataaacaacttaactaagcgcttatagcataag 2201044  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4534532 - 4534500
Alignment:
Q  163 tctgtttggataaacaacttaactaagcactta 195  Q
    |||||||||||||||||||||| ||||||||||    
T  4534532 tctgtttggataaacaacttaattaagcactta 4534500  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 47904144 - 47904088
Alignment:
Q  235 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataag 291  Q
    ||||||||| |||||| | |||||||||| ||||| | | |||||||||||||||||    
T  47904144 ttcatataatctataagtggttttcataagctatcgtgaagagcttacggaaataag 47904088  T

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