View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11418_low_1 (Length: 704)
Name: NF11418_low_1
Description: NF11418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11418_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 287 - 704
Target Start/End: Complemental strand, 44546893 - 44546476
Alignment:
| Q |
287 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
386 |
Q |
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| T |
44546893 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
44546794 |
T |
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| Q |
387 |
tatttccttctgaagccacatcacttttcttattgttaatcccacgtttcctagcagcagagccagagagttttgttgcacctttcaatttcctacccct |
486 |
Q |
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| T |
44546793 |
tatttccttttgaagccacatcacttttcttattgttaatcccacgtttcctagcagcagagccagagagttttgttgcacctttcaatttcctacccct |
44546694 |
T |
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| Q |
487 |
accacccttctttgaaaccacacgatttgtttgaacattacgtctctttccaccaagtttaccctttttctttgttgcacatgatgattcatnnnnnnna |
586 |
Q |
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| T |
44546693 |
accacccttctttgaaaccacacgatttgtttgaacattacgtctctttccaccaagtttatcctttttctttgttgcacatgatgattcatccccccca |
44546594 |
T |
|
| Q |
587 |
tattttacatacacatcatcctcaactatctcaagtacattagattttccatgacgcttcatatgcttcattaaaaacctatgtcgttcattttcttctt |
686 |
Q |
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| T |
44546593 |
tattttacatacacatcatcctcaactatctcaagtacattagattttccatgacgcttcatatgcttcaataaaaacctatgtcgttcattttcttctt |
44546494 |
T |
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| Q |
687 |
cattgctgttgctgtcgt |
704 |
Q |
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| T |
44546493 |
cattgctgttgctgtcgt |
44546476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 44547167 - 44546958
Alignment:
| Q |
9 |
tcacacaatcggtgcatcgctaactgttagatgggatcaagatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagcaatggca |
108 |
Q |
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| T |
44547167 |
tcacacaatcagtgcatcgctaactgttagatgggatcaagatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagcaatgaca |
44547068 |
T |
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| Q |
109 |
ttcgaatagatagtacatacacatcataaaagaaagataaaatgtggactattagnnnnnnnnnnnnttgacaaatataagattgcatattaccaagctt |
208 |
Q |
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| T |
44547067 |
ttcga----atagtacatacacatcataaaagaaagataaaatgtggactattagaaaaaagaaaaattgacaaatttaagattgcatattaccaagctt |
44546972 |
T |
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| Q |
209 |
tccacattaattat |
222 |
Q |
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| T |
44546971 |
tccacattaattat |
44546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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