View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11418_low_2 (Length: 484)
Name: NF11418_low_2
Description: NF11418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11418_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 471
Target Start/End: Complemental strand, 44577660 - 44577226
Alignment:
| Q |
20 |
ggatagtgatcaatataatgggctcctaggatcagagtgcgacatgaaacttcattccaaatcaaggtccaacccagtttgtgaaatttgatgaagcaag |
119 |
Q |
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| T |
44577660 |
ggatagtgatcaatataatgggctcctaggatcagagtgcgacatgaaactttattccaaatcaaggtccaacccagtttgtgaaatttgatgaagcaag |
44577561 |
T |
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| Q |
120 |
cattctagttcaccattgaagtggatgaggtctatctatgagtttgagccttaaaaacctcatgagtatgtggtgttagagaaaat--gaagactaagca |
217 |
Q |
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| T |
44577560 |
cattctagttcaccattgaagtggatgaggtctatctatgagtttgagccttaaaaacctcatgagtatgtagtgttagagaaaatgagaagactaagca |
44577461 |
T |
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| Q |
218 |
ttctagtttgcaatgtaaaggaattgcttgcagaccatatattgaaacaaactccaaatcatgtctttgtctaaggaatttgaagactgattcctagcat |
317 |
Q |
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| T |
44577460 |
ttctagtttgtaatgtaaacgaattgcttgcagacaatatattgaaacaaactccaaatcatgtctttgtctaaggaatttgaagactgattcctagcat |
44577361 |
T |
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| Q |
318 |
tcttcaggnnnnnnntttcactaacatattgatgcgataaatatttgatctaacaagtagagagaaacaagactcctagcaaaacaagcttggaacaaaa |
417 |
Q |
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| T |
44577360 |
tcttcaggaaaaaaatttcactaacatattgatgcgataaatatttgatctaacaagtagagagaaacaagactcctag-------------------aa |
44577280 |
T |
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| Q |
418 |
agaaaaagttattgtaaagaagttgaagaaatgggagtcttgtattgtatttga |
471 |
Q |
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| T |
44577279 |
agaaaaagttattgtaaagaagttgaagaaatgggagccttgtattgtatttga |
44577226 |
T |
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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 1743672 - 1743737
Alignment:
| Q |
77 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
142 |
Q |
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| T |
1743672 |
caaatcaaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
1743737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 2006709 - 2006644
Alignment:
| Q |
78 |
aaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtgg |
143 |
Q |
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| T |
2006709 |
aaatcaaggtccagcccagattgtgaaacttgatgaagcaagccttcaagttcaccattgaagtgg |
2006644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 1498410 - 1498332
Alignment:
| Q |
76 |
ccaaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtggatgaggtctat |
154 |
Q |
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| T |
1498410 |
ccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctat |
1498332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 1743834 - 1743928
Alignment:
| Q |
223 |
gtttgcaatgtaaaggaattgcttgcagaccatatattgaaacaaactccaaatcatgtctttgtctaaggaatttgaagactgattcctagcattctt |
321 |
Q |
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| T |
1743834 |
gtttgtaatggaaaggaatttcttgcagaccata----gaaacagactccaaatcttttccttggccaaggaatttgaagattgattcccaacattctt |
1743928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 2006548 - 2006454
Alignment:
| Q |
223 |
gtttgcaatgtaaaggaattgcttgcagaccatatattgaaacaaactccaaatcatgtctttgtctaaggaatttgaagactgattcctagcattctt |
321 |
Q |
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| T |
2006548 |
gtttgtaatggaaaggaatttcttgcagaccata----gaaacagactccaaatcatctccttggccaaggaatcttaagattgattcccaacattctt |
2006454 |
T |
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