View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11418_low_4 (Length: 418)

Name: NF11418_low_4
Description: NF11418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11418_low_4
NF11418_low_4
[»] scaffold0257 (1 HSPs)
scaffold0257 (28-418)||(17587-17979)
[»] chr3 (28 HSPs)
chr3 (161-418)||(28147992-28148250)
chr3 (265-418)||(28053733-28053886)
chr3 (265-418)||(28064158-28064311)
chr3 (141-418)||(28002436-28002721)
chr3 (289-418)||(28184025-28184154)
chr3 (280-418)||(28481358-28481496)
chr3 (280-418)||(28132208-28132346)
chr3 (289-414)||(28159465-28159590)
chr3 (135-414)||(28035690-28035977)
chr3 (280-418)||(28082001-28082139)
chr3 (280-418)||(28510530-28510668)
chr3 (265-414)||(27918634-27918783)
chr3 (210-408)||(11418999-11419197)
chr3 (274-418)||(27975610-27975754)
chr3 (295-410)||(27460919-27461034)
chr3 (268-372)||(17746019-17746123)
chr3 (268-372)||(19047339-19047443)
chr3 (174-235)||(28481226-28481286)
chr3 (174-235)||(28510407-28510467)
chr3 (174-233)||(28159634-28159692)
chr3 (174-232)||(28184199-28184256)
chr3 (148-239)||(27918818-27918907)
chr3 (28-68)||(28054019-28054059)
chr3 (28-68)||(28064444-28064484)
chr3 (155-231)||(28082191-28082266)
chr3 (274-348)||(26627822-26627896)
chr3 (88-185)||(11419208-11419305)
chr3 (332-405)||(27392146-27392219)
[»] chr7 (2 HSPs)
chr7 (141-235)||(8693124-8693216)
chr7 (341-414)||(8693252-8693325)
[»] chr2 (2 HSPs)
chr2 (366-418)||(8020019-8020071)
chr2 (174-235)||(8020145-8020205)


Alignment Details
Target: scaffold0257 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 28 - 418
Target Start/End: Complemental strand, 17979 - 17587
Alignment:
Q  28 catacctcataccgttactttagaagattcaattgtttataaattgagagaaatatatatatttagagatgaattttaaagaaaatccaaccataaatct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17979 catacctcataccgttactttagaagattcaattgtttataaattgagagaaatatatatatttagagatgaattttaaagaaaatccaaccataaatct 17880  T
Q  128 attccacggtatatttttgctgctgtaaatataaatgcatgacatttaattatttacaaccatcatgta--atagtttttaaaaaatattggatagagtg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  17879 attccacggtatatttttgctgctgtaaatataaatgcatgacatttaattatttacaaccatcatgtataatagtttaaaaaaaatattggatagagtg 17780  T
Q  226 tgtaccgtagtcaagacccaaacgatcaatttcattatagaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtat 325  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17779 tgtaccgtagccaagacccaaacgatgaatttcattatagaagtctggtgttgatgctgaagccagagatagtttttgacaattctgtatgaaacggtat 17680  T
Q  326 tttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17679 tttacagcttgaaattgaattccctgggcatgactgagtcttggtagattttcaaatactacaaattttagatttggaatctccattttgtga 17587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 161 - 418
Target Start/End: Complemental strand, 28148250 - 28147992
Alignment:
Q  161 aatgcatgacatttaattatttacaaccatcatgtaatagtttttaaaaa-atattggatagagtgtgtaccgtagtcaagacccaaacgatcaatttca 259  Q
    ||||||||| || |||||||||||  ||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| | |  ||  |  ||| |||    
T  28148250 aatgcatgatatgtaattatttacggccaacatgtaatagtttttaaaaatatattggatagagtctgtaccgtagccaaaatctgaagcagaaatatca 28148151  T
Q  260 ttatagaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgac 359  Q
    || | |||||||||||||||  |||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| | ||||||     
T  28148150 ttttcgaagtctggtgttgactctgaagccagagatagtttttgacaattcagtatgaaacgatgttttacaacttgaaattgaattccctgagcatgat 28148051  T
Q  360 tgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
     ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28148050 agaggcttggtagattttcaaatattacaagttttagatttggaatctccactttgtga 28147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 28053886 - 28053733
Alignment:
Q  265 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 364  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  28053886 gaagtctagtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgagg 28053787  T
Q  365 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28053786 cttggtagattttcaaatactacaagttttagatttggaatctccactttgtga 28053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 265 - 418
Target Start/End: Complemental strand, 28064311 - 28064158
Alignment:
Q  265 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 364  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  28064311 gaagtctagtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgagg 28064212  T
Q  365 cttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28064211 cttggtagattttcaaatactacaagttttagatttggaatctccactttgtga 28064158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 141 - 418
Target Start/End: Complemental strand, 28002721 - 28002436
Alignment:
Q  141 tttttgctgctgtaaatataaatgcatgacatttaatta-tttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtagtcaa 239  Q
    |||||| |||||||||||| ||||| ||| || |||| | |||||| ||| ||| ||||||||||  ||||||||||||||||||||||||| | |||||    
T  28002721 tttttgttgctgtaaatattaatgcttgatatgtaatcaatttacagccaacatttaatagtttt--aaaaatattggatagagtgtgtaccctcgtcaa 28002624  T
Q  240 ----gacccaa-----acgatcaatttcattatagaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttac 330  Q
        |||| ||     || |  ||| ||||| | |||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||| | ||||||    
T  28002623 accagaccgaacgtaaaccagaaatatcattttcgaagtctgctgttgatgctgaagtcagagatagtttttgacaattcagtatgagacgatgttttac 28002524  T
Q  331 agcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    ||||| ||||||||||||| |  |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28002523 agcttcaaattgaattccctgatcatgacagaggcttcgtagattttcaaatactacaaattttagatttggaatctcgactttgtga 28002436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 289 - 418
Target Start/End: Complemental strand, 28184154 - 28184025
Alignment:
Q  289 cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca 388  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  28184154 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactaca 28184055  T
Q  389 aattttagatttggaatctccactttgtga 418  Q
     ||| |||||||||||||||||||||||||    
T  28184054 cattctagatttggaatctccactttgtga 28184025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 28481358 - 28481496
Alignment:
Q  280 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 379  Q
    |||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |  |||||| |||||||||||||||||||    
T  28481358 tgctgaagccagagagagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttca 28481457  T
Q  380 aatactacaaattttagatttggaatctccactttgtga 418  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  28481458 aatactacaaattttagatttggaatctcgactttgtga 28481496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 280 - 418
Target Start/End: Complemental strand, 28132346 - 28132208
Alignment:
Q  280 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 379  Q
    |||||||| |||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  28132346 tgctgaagtcagagagagtttttgacaattctgtatgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttca 28132247  T
Q  380 aatactacaaattttagatttggaatctccactttgtga 418  Q
    |||| ||||| ||| ||||||||||||||||||||||||    
T  28132246 aatattacaactttcagatttggaatctccactttgtga 28132208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 28159590 - 28159465
Alignment:
Q  289 cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca 388  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||    
T  28159590 cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactaca 28159491  T
Q  389 aattttagatttggaatctccacttt 414  Q
     ||| |||||||||||||| ||||||    
T  28159490 cattctagatttggaatcttcacttt 28159465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 135 - 414
Target Start/End: Complemental strand, 28035977 - 28035690
Alignment:
Q  135 ggtatatttttgctgctgtaaatataaatgcatgacatttaatta-tttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgt 233  Q
    ||||| |||||| |||||||||||| | ||||||| || |||| | |||||| ||| ||| ||||||||||  ||||||||||||||||||| |||||||    
T  28035977 ggtatgtttttgttgctgtaaatattagtgcatgatatgtaatcaatttacagccaacatttaatagtttt--aaaaatattggatagagtgcgtaccgt 28035880  T
Q  234 agtcaagaccc----------aaacgatcaatttcattatagaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggt 323  Q
    |||||| || |          |||| |  ||| ||||| |  |||| || |||||||| ||||| |||||||||| ||||||||||| | |||||||| |    
T  28035879 agtcaa-actcgccagaatataaaccagaaatatcattttcaaagtttgttgttgatgatgaagccagagatagtgtttgacaattctgcatgaaacgtt 28035781  T
Q  324 attttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccacttt 414  Q
     |||||||| |||||| ||||||| | || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28035780 gttttacagtttgaaaatgaattctctggacatgactgagtcttggtagattttcaaacactacaaattttagatttggaatctccacttt 28035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 280 - 418
Target Start/End: Complemental strand, 28082139 - 28082001
Alignment:
Q  280 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 379  Q
    |||||||| |||||| ||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||  ||||||||| ||||||||| |||||||||    
T  28082139 tgctgaagccagagagagtttttgacaattctgtatgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttca 28082040  T
Q  380 aatactacaaattttagatttggaatctccactttgtga 418  Q
    ||||||||||||  ||||| |||||||||||||||||||    
T  28082039 aatactacaaatcgtagatatggaatctccactttgtga 28082001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 28510530 - 28510668
Alignment:
Q  280 tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca 379  Q
    |||||||| |||||| |||||||||||||||  ||| ||||| | ||||||||||||||||||||||||| | ||||||  |||||||||||||||||||    
T  28510530 tgctgaagccagagagagtttttgacaattcattattaaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttca 28510629  T
Q  380 aatactacaaattttagatttggaatctccactttgtga 418  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  28510630 aatattacaagttttagatttggaatctccactttgtga 28510668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 414
Target Start/End: Complemental strand, 27918783 - 27918634
Alignment:
Q  265 gaagtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgagg 364  Q
    |||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||| | |||||||| |||||| ||||||||| || ||| |||||||    
T  27918783 gaagtctattgttgatgatgaagccagagatagtgtttgacaattctgtatgaaacgatgttttacagtttgaaaatgaattccctggacatcactgagg 27918684  T
Q  365 cttggtagattttcaaatactacaaattttagatttggaatctccacttt 414  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  27918683 cttggtagattttcaaatactagatattctagatttggaatctccacttt 27918634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 408
Target Start/End: Complemental strand, 11419197 - 11418999
Alignment:
Q  210 aatattggatagagtgtgtaccgtagtcaagacccaaacgatcaatttcattatagaagtctggtgttgatgctgaaggcagagatagtttttgacaatt 309  Q
    ||||||||||||||||||||||||||||||   | ||||||| ||  ||||| |  | | ||| ||||| || ||||| |||||| ||||||||||||||    
T  11419197 aatattggatagagtgtgtaccgtagtcaaacactaaacgatgaacctcattttttaggcctgctgttgttgatgaagccagagagagtttttgacaatt 11419098  T
Q  310 ccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctc 408  Q
    | |||||||||| ||||||||||||||| ||||||||| | ||| ||  | ||  ||||| |||||||||||||||| |||||| ||||| ||||||||    
T  11419097 ctgtatgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcagattttcaaatactaaaaatttaagattcggaatctc 11418999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 418
Target Start/End: Complemental strand, 27975754 - 27975610
Alignment:
Q  274 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga 373  Q
    |||||||||| | | ||| || ||||||||||||||| |||||  | | | ||||||||||||||||||||||||  || |||||  |||||||||||||    
T  27975754 tgttgatgctaacgccagggagagtttttgacaattctgtatggcatgatgttttacagcttgaaattgaattccttggtcatgatggaggcttggtaga 27975655  T
Q  374 ttttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    |||||||||| ||||| | | ||||||||||||||||||||||||    
T  27975654 ttttcaaatattacaactatcagatttggaatctccactttgtga 27975610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 27460919 - 27461034
Alignment:
Q  295 tagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaatttt 394  Q
    |||||||||||||||| |||  ||| | | |||||||||||| | |||||||||| || |||||| |||||||||||||||| |||||||||||| ||||    
T  27460919 tagtttttgacaattctgtaccaaatgatgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagtttt 27461018  T
Q  395 agatttggaatctcca 410  Q
    ||||||||||||||||    
T  27461019 agatttggaatctcca 27461034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 17746019 - 17746123
Alignment:
Q  268 gtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggctt 367  Q
    ||||| ||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||  | || ||||  ||||||    
T  17746019 gtctgctgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggctt 17746118  T
Q  368 ggtag 372  Q
    |||||    
T  17746119 ggtag 17746123  T

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Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 19047339 - 19047443
Alignment:
Q  268 gtctggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggctt 367  Q
    ||||| ||||| |||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||  | || ||||  ||||||    
T  19047339 gtctgctgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggctt 19047438  T
Q  368 ggtag 372  Q
    |||||    
T  19047439 ggtag 19047443  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 28481226 - 28481286
Alignment:
Q  174 taattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtag 235  Q
    |||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  28481226 taataatttacagccaacatgtaatagtttt-aaaaaatattggatagaatgtgtaccgtag 28481286  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 28510407 - 28510467
Alignment:
Q  174 taattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtag 235  Q
    |||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  28510407 taataatttacagccaacatgtaatagtttt-aaaaaatattggatagaatgtgtaccgtag 28510467  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 28159692 - 28159634
Alignment:
Q  174 taattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgt 233  Q
    |||| ||||||| | | |||||||||||||||||||| ||||||||||||||||||||||    
T  28159692 taataatttacagcaaacatgtaatagtttttaaaaa-tattggatagagtgtgtaccgt 28159634  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 28184256 - 28184199
Alignment:
Q  174 taattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccg 232  Q
    |||| ||||||| | | |||||||||||||||||||| |||||||||||||||||||||    
T  28184256 taataatttacagcaaacatgtaatagtttttaaaaa-tattggatagagtgtgtaccg 28184199  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 27918907 - 27918818
Alignment:
Q  148 tgctgtaaatataaatgcatgacatttaattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtagtcaa 239  Q
    |||||||||||| ||||||||| || |||||||| ||| |||  || ||||||||||  ||| ||| |||||| |||||||||||| |||||    
T  27918907 tgctgtaaatattaatgcatgatatgtaattattgacagccaatatttaatagtttt--aaatataatggataaagtgtgtaccgttgtcaa 27918818  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 28054059 - 28054019
Alignment:
Q  28 catacctcataccgttactttagaagattcaattgtttata 68  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  28054059 catacctcttaccgctactttagaagattcaattgtttata 28054019  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 28064484 - 28064444
Alignment:
Q  28 catacctcataccgttactttagaagattcaattgtttata 68  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  28064484 catacctcttaccgctactttagaagattcaattgtttata 28064444  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 28082266 - 28082191
Alignment:
Q  155 aatataaatgcatgacatttaattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtacc 231  Q
    ||||| ||||||||  || |||| |||||||  || |||||||||||||||| ||||||||||||||| ||||||||    
T  28082266 aatattaatgcatggtatataataatttacagtcaacatgtaatagttttta-aaaatattggatagaatgtgtacc 28082191  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 26627896 - 26627822
Alignment:
Q  274 tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcc 348  Q
    ||||||||||||||  ||||| ||||||||||||||| |||  ||||| | || |||| | ||||||||||||||    
T  26627896 tgttgatgctgaagttagagagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattcc 26627822  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 11419305 - 11419208
Alignment:
Q  88 atttagagatgaattttaaagaaaatccaaccataaatctattccacggtatatttttgctgctgtaaatataaatgcatgacatttaattatttaca 185  Q
    |||||||| || ||||||||| ||   || ||||||||||| ||   ||||| |||||| |||| ||||||| ||||||||| || ||||||||||||    
T  11419305 atttagagctggattttaaaggaagatcatccataaatctagtcattggtatgtttttgttgctttaaatattaatgcatgatatgtaattatttaca 11419208  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 27392146 - 27392219
Alignment:
Q  332 gcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaat 405  Q
    |||||||| ||||||||  |||  || |||||||||||||| ||  ||||| |||||||||| |||||||||||    
T  27392146 gcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaatgctacaaatttcagatttggaat 27392219  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 8693124 - 8693216
Alignment:
Q  141 tttttgctgctgtaaatataaatgcatgacatttaattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtag 235  Q
    |||||| |||| ||||||| ||||||||| || |||||||||||| ||| | |||||||||||  ||||||||||||||||||||||||||||||    
T  8693124 tttttgttgctataaatattaatgcatgatatgtaattatttacagccaacgtgtaatagttt--aaaaaatattggatagagtgtgtaccgtag 8693216  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 341 - 414
Target Start/End: Original strand, 8693252 - 8693325
Alignment:
Q  341 tgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccacttt 414  Q
    ||||||||  ||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||| |||||    
T  8693252 tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgacttt 8693325  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 8020071 - 8020019
Alignment:
Q  366 ttggtagattttcaaatactacaaattttagatttggaatctccactttgtga 418  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  8020071 ttggtagattttcaaatattacaactttcagatttggaatctccactttgtga 8020019  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 8020205 - 8020145
Alignment:
Q  174 taattatttacaaccatcatgtaatagtttttaaaaaatattggatagagtgtgtaccgtag 235  Q
    |||||||||||| ||| | |||||||||||||||||| ||||| ||||||||||||||||||    
T  8020205 taattatttacagccaacgtgtaatagtttttaaaaa-tattgtatagagtgtgtaccgtag 8020145  T

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