View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11418_low_8 (Length: 251)
Name: NF11418_low_8
Description: NF11418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11418_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 29462673 - 29462889
Alignment:
| Q |
22 |
aaaatggcctatatgttgttaaggtgtaaaaaatgttgaaaaaatttataattaatgtgtgattttgtatgtacgcaannnnnnnnn---atgaaaataa |
118 |
Q |
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| T |
29462673 |
aaaatggcctatatgttgttaaggtgtaaaaaatgttgaaaaaatttataattaatgtgtgattttgtatgtacgcatttttttttttttatgaaaataa |
29462772 |
T |
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| Q |
119 |
atttaacactcatttcattaatcaatgaagagttaatacaaagaggaacataatcatgaacaaggtggctagcataagaattggcctccctagcgaagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29462773 |
atttaacactcatttcattaatcaatgaagagttaatacaaagaggaacataatcatgaacatggtggctagcataagaattggcctccctagcgaagct |
29462872 |
T |
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| Q |
219 |
atgagcaaccatatgct |
235 |
Q |
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||||||||||||||||| |
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| T |
29462873 |
atgagcaaccatatgct |
29462889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 9363290 - 9363209
Alignment:
| Q |
11 |
caaagggttgaaaaatggcctatatgttgttaaggtgtaaaaaatgttgaaaaaatttataattaatgtgtgattttgtatgta |
94 |
Q |
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| T |
9363290 |
caaagtgttgagaaatggcttatatgtcgttaagttgtaaaaagtgttgaaacaatttataatc--tgtgtgattttgtatgta |
9363209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 37511204 - 37511253
Alignment:
| Q |
126 |
actcatttcattaatcaatgaagagttaatacaaagaggaacataatcat |
175 |
Q |
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| T |
37511204 |
actcatttcgttaatcaataaaaagttaatacaaagaggaacataatcat |
37511253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 26159294 - 26159244
Alignment:
| Q |
153 |
aatacaaagaggaacataatcatgaacaaggtggctagcataagaattggc |
203 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
26159294 |
aatacaaggaggaacataatcatgaacttggtggctagaataagaattggc |
26159244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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