View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11419_high_16 (Length: 219)

Name: NF11419_high_16
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11419_high_16
NF11419_high_16
[»] chr2 (7 HSPs)
chr2 (1-215)||(19081395-19081609)
chr2 (142-215)||(18714281-18714354)
chr2 (48-181)||(45272180-45272313)
chr2 (48-103)||(26833394-26833449)
chr2 (39-103)||(19518279-19518343)
chr2 (47-120)||(37049270-37049343)
chr2 (142-214)||(10580080-10580152)
[»] chr3 (1 HSPs)
chr3 (31-212)||(30434680-30434860)
[»] chr5 (3 HSPs)
chr5 (1-212)||(17318095-17318306)
chr5 (52-181)||(22436878-22437007)
chr5 (63-105)||(22238060-22238102)
[»] chr7 (2 HSPs)
chr7 (47-105)||(25708213-25708271)
chr7 (48-105)||(21663108-21663165)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 19081609 - 19081395
Alignment:
Q  1 tttcttcagttttctattttgttagcgggtcgacaaccaaaagattctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaa 100  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||  ||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  19081609 tttctttagttttctattttgttagcgggtcggcaattaaaagatcatttatgcaactcttatgacttttgtgtgtttgggtgttatagtaagaacgtaa 19081510  T
Q  101 taatattttgtttaaaaatacggtaaataccattcacctactgttggaaaaagtgcaaattcattcctactggtggatgaaaatggcgaatgcagttcat 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19081509 taatattttgtttaaaaatacggtaaataccattcaccaactgttggaaaaagtgcaaattcattcctactggtggatgaaaacggcgaatgcagttcat 19081410  T
Q  201 gttttaggagttcat 215  Q
    |||||||||||||||    
T  19081409 gttttaggagttcat 19081395  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 18714354 - 18714281
Alignment:
Q  142 tgttggaaaaagtgcaaattcattcctactggtggatgaaaatggcgaatgcagttcatgttttaggagttcat 215  Q
    |||||||||||||| |||||||||||||||||||||||||   ||||||||  |||||||||||||||||||||    
T  18714354 tgttggaaaaagtgaaaattcattcctactggtggatgaaggcggcgaatgttgttcatgttttaggagttcat 18714281  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 45272313 - 45272180
Alignment:
Q  48 tttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataatattttgtttaaaaatacggtaaataccattcacctactgttgg 147  Q
    |||||||||||| | |||||||||||| |||| || ||  || | |||| ||||||||  |||||||||||||||||||||||  |||| |   ||||||    
T  45272313 tttatgcaactcatgtggcttttgtgtatttgagttttgcggactgaacataataatagattgtttaaaaatacggtaaatactcttcatcagttgttgg 45272214  T
Q  148 aaaaagtgcaaattcattcctactggtggatgaa 181  Q
    |||||||  |||| || || || |||||||||||    
T  45272213 aaaaagttaaaatccactcatattggtggatgaa 45272180  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 26833449 - 26833394
Alignment:
Q  48 tttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataa 103  Q
    ||||||||||| ||||||||||| ||||||||||| || ||||||||| |||||||    
T  26833449 tttatgcaactattatggcttttatgtgtttgggttttgtggtcagaatgtaataa 26833394  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 19518279 - 19518343
Alignment:
Q  39 aaaagattctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataa 103  Q
    |||||||  |||||||||||  | |||||||| |||||||||||  |||||||||||||||||||    
T  19518279 aaaagatcttttatgcaacttgtgtggcttttatgtgtttgggttatatggtcagaacgtaataa 19518343  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 37049270 - 37049343
Alignment:
Q  47 ctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataatattttgtttaaaaata 120  Q
    |||||||||||| || ||||| || || ||||||||  | ||||| |||||||||||||  |||||||||||||    
T  37049270 ctttatgcaacttttgtggctattatgcgtttgggttctgtggtccgaacgtaataatagattgtttaaaaata 37049343  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 10580152 - 10580080
Alignment:
Q  142 tgttggaaaaagtgcaaattcattcctactggtggatgaaaatggcgaatgcagttcatgttttaggagttca 214  Q
    |||||||||||||  ||||||||||||| || ||||||||  |||||||||| ||| |||  ||||| |||||    
T  10580152 tgttggaaaaagttaaaattcattcctattgatggatgaaggtggcgaatgccgtttatgaattaggggttca 10580080  T

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Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 30434860 - 30434680
Alignment:
Q  31 cgacaaccaaaagattctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataatattttgtttaaaaatacggtaaatac 130  Q
    ||||||| |||||||  |||||||||||| | |||||| | ||||||||| | |||||| | |||| ||||||||  ||||| |||||||||||||||||    
T  30434860 cgacaactaaaagatcttttatgcaactcatgtggcttctttgtgtttggattttatggaccgaacataataatagattgttcaaaaatacggtaaatac 30434761  T
Q  131 cattcacctactgttggaaaaagtgcaaattcattcctactggtggatgaaaatggcgaatgcagttcatgttttaggagtt 212  Q
    |||||||| | |||||| ||||||| |||||||||||||||||||||||||   ||||||||  ||||||||||||||||||    
T  30434760 cattcaccaattgttgg-aaaagtgaaaattcattcctactggtggatgaaggcggcgaatgtcgttcatgttttaggagtt 30434680  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 17318306 - 17318095
Alignment:
Q  1 tttcttcagttttctattttgttag-cgggtcgacaaccaaaagattctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgta 99  Q
    |||||||| |||| | ||||| ||| |||||| ||||| || |||| |||| | |||||||| |||||||||||||||||||| | | | || |||| ||    
T  17318306 tttcttcaattttattttttggtaggcgggtcaacaactaagagatcctttgttcaactcttgtggcttttgtgtgtttgggtat-acgttctgaacata 17318208  T
Q  100 ataatattttgtttaaaaatacggtaaataccattcacctactgttggaaaaagtgcaaattcattcctactggtggatgaaaatggcgaatgcagttca 199  Q
    ||||||  || ||||||| || ||| | ||||||||||| | |||||||||||  ||||||||||||||| || ||||||||  |||  ||||  |||||    
T  17318207 ataatagattatttaaaattaaggttactaccattcaccaaatgttggaaaaatagcaaattcattcctattgttggatgaaggtggttaatgttgttca 17318108  T
Q  200 tgttttaggagtt 212  Q
    |||||||||||||    
T  17318107 tgttttaggagtt 17318095  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 22437007 - 22436878
Alignment:
Q  52 tgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataatattttgtttaaaaatacggtaaataccattcacctactgttggaaaa 151  Q
    ||||||| |||||||| ||||| ||||| || || ||||| |||||||||||||  ||||||||||||||||||| ||| ||||| |   || | |||||    
T  22437007 tgcaactattatggctattgtgcgtttgagttttgtggtctgaacgtaataatagattgtttaaaaatacggtaactactattcatcagttggtcgaaaa 22436908  T
Q  152 agtgcaaattcattcctactggtggatgaa 181  Q
    |||  ||||||| || || |||||||||||    
T  22436907 agttaaaattcactcgtattggtggatgaa 22436878  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 22238102 - 22238060
Alignment:
Q  63 tggcttttgtgtgtttgggtgttatggtcagaacgtaataata 105  Q
    ||||||||||||||||||||||| ||||  |||||||||||||    
T  22238102 tggcttttgtgtgtttgggtgttgtggtatgaacgtaataata 22238060  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 25708271 - 25708213
Alignment:
Q  47 ctttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataata 105  Q
    |||||||||||| || |||||||||| ||||||| |||||||||  || ||||||||||    
T  25708271 ctttatgcaacttttgtggcttttgtatgtttggatgttatggtttgagcgtaataata 25708213  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 21663108 - 21663165
Alignment:
Q  48 tttatgcaactcttatggcttttgtgtgtttgggtgttatggtcagaacgtaataata 105  Q
    ||||||||||| || ||||| || ||||| |||||||||||| | |||||||||||||    
T  21663108 tttatgcaacttttgtggctcttatgtgtgtgggtgttatggactgaacgtaataata 21663165  T

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