View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_high_3 (Length: 521)
Name: NF11419_high_3
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 9299090 - 9298596
Alignment:
| Q |
19 |
gatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactttaaa |
118 |
Q |
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| T |
9299090 |
gatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactttaaa |
9298991 |
T |
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| Q |
119 |
ctggtataatttaatatatagagcaagagagggataaagtagacagaagatgatataaagaaacataattgtatctatctctatgctattaagaatgaaa |
218 |
Q |
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| T |
9298990 |
ctggtataatttaatatatagagcaagagagggataaagtagaaagaagatgatataaagaaacataattgtatctatctctatgctattaaaaatgaaa |
9298891 |
T |
|
| Q |
219 |
ataatatgctgcnnnnnnnnnntattgattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatg |
318 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9298890 |
ataatatgctgcaaaaaaaaa-tatagattaagaatcggtcaaagtccaagaatatgatgtgcattgcaagctccctattcaagtacatgataaataatg |
9298792 |
T |
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| Q |
319 |
ctaagaaacacattgatcttcaagtacatgtttcaacaaaatgtttttgatcgattaaaattcacactgagtcctccaaatttacgagacccacataatc |
418 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| |||||||||||| |
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| T |
9298791 |
ctaagaaacacattgatctacaagtacatgtttcaacaaaatgtttttgattgattaaaattcatagtgaatcctccaaatttacgatacccacataatc |
9298692 |
T |
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| Q |
419 |
aattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcacttaattttaatatcaacacctttttctctcgcttctcttcatctca |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9298691 |
aattcaaaagagttttgaaaaatatgtattaaaaattatgttgccatcatttaattttaatatcaacacctttttctctcgcttctcttcttctca |
9298596 |
T |
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