View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11419_low_1 (Length: 659)

Name: NF11419_low_1
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11419_low_1
NF11419_low_1
[»] chr2 (3 HSPs)
chr2 (156-650)||(35973532-35974043)
chr2 (18-92)||(35974104-35974178)
chr2 (199-243)||(31026704-31026748)
[»] chr6 (3 HSPs)
chr6 (199-241)||(15443704-15443746)
chr6 (208-246)||(8931605-8931643)
chr6 (204-246)||(12627819-12627861)
[»] chr5 (1 HSPs)
chr5 (199-243)||(22423818-22423862)
[»] chr3 (2 HSPs)
chr3 (199-243)||(7614421-7614465)
chr3 (199-241)||(21419463-21419505)
[»] chr8 (1 HSPs)
chr8 (199-242)||(8798838-8798881)
[»] chr7 (3 HSPs)
chr7 (199-243)||(5835256-5835300)
chr7 (199-243)||(24146825-24146869)
chr7 (204-232)||(36813197-36813225)


Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 156 - 650
Target Start/End: Complemental strand, 35974043 - 35973532
Alignment:
Q  156 ttctatgattataaactacgaagcacaaactcatataagg-------gaaaatagtttaagaaaataacataattcaatataattatatatgtcgatg-- 246  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||||||||||       
T  35974043 ttctatgattataaactacgaagcacaaactcatataaggacgacacgaaaacggtttaagaaaataacataattcaatataattatatatgtcgatata 35973944  T
Q  247 --------cagaacacactaatctgaggaacatatgttatgaataatgatatagattgtgaagacttactttctaggctaaattgtgaaaagtgaagttc 338  Q
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35973943 tacgacaccagaacacactaatctgaggaacatatgttatgaattatgatatagattgtgaagacttactttctaggctaaattgtgaaaagtgaagttc 35973844  T
Q  339 aaaatccgagccaaatcttgaaggcaggattggacggcgagcttcattgatatactgccgcacggcggtttccactagatcgccgacagttgattccggc 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35973843 aaaatccgagccaaatcttgaaggcaggattggacggcgagcttcattgatatactgccgcacggcggtttccactagatcgccgacagttgattccggt 35973744  T
Q  439 ttcatcagcatctgaacgggaccaaggcttccaagaaccgtcactttcaaaagcaacttcggtggttgtctaggaagaccttccgtcaccggaaggacgt 538  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35973743 ttcatcagcatctgaataggaccaaggcttccaagaaccgtcactttcaaaagcaacttcggtggttgtctaggaagaccttccgtcaccggaaggacgt 35973644  T
Q  539 tgttccggtaagatagaagatcaggaacggtttttggacggcgaattgtagcagtggtcgtcataacgttgtttccgtgaaaagatgaagatctgtcgct 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35973643 tgttccggtaagatagaagatcaggaacggtttttggacggcgaattgtagcagtggtcgtcataacgttgtttccgtgaaaagatgaagatctctcgct 35973544  T
Q  639 caaccttctctg 650  Q
    ||||||||||||    
T  35973543 caaccttctctg 35973532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 35974178 - 35974104
Alignment:
Q  18 atttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctctctattcaaacctacacatca 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||    
T  35974178 atttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctccctgttcaaacctacgcatca 35974104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 31026704 - 31026748
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtcg 243  Q
    |||| ||||||||||| |||||||||||| |||| ||||||||||    
T  31026704 aataatttaagaaaatgacataattcaatgtaatcatatatgtcg 31026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 15443704 - 15443746
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgt 241  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  15443704 aataatttgagaaaataacataattcaatataattatatatgt 15443746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 8931643 - 8931605
Alignment:
Q  208 agaaaataacataattcaatataattatatatgtcgatg 246  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  8931643 agaaaataacataattcagtataattatatgtgtcgatg 8931605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 12627861 - 12627819
Alignment:
Q  204 tttaagaaaataacataattcaatataattatatatgtcgatg 246  Q
    ||||||||||||||||| |||||| |||| |||||||||||||    
T  12627861 tttaagaaaataacatatttcaatgtaatcatatatgtcgatg 12627819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 22423862 - 22423818
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtcg 243  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  22423862 aataatttgagaaaatcacataattcaatataattatatatgtcg 22423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 7614465 - 7614421
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtcg 243  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  7614465 aataatttaagaaaatcacataattcagtataattatatatgtcg 7614421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 21419505 - 21419463
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgt 241  Q
    |||| ||||||||||||| |||||||||| |||||||||||||    
T  21419505 aataatttaagaaaataatataattcaatgtaattatatatgt 21419463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 8798881 - 8798838
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtc 242  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||    
T  8798881 aataatttgagaaaataacataattcaatataattatatgtgtc 8798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 5835256 - 5835300
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtcg 243  Q
    |||||||| |||||||||||||||||| | ||||||||| |||||    
T  5835256 aatagtttgagaaaataacataattcagtgtaattatatgtgtcg 5835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 24146825 - 24146869
Alignment:
Q  199 aatagtttaagaaaataacataattcaatataattatatatgtcg 243  Q
    |||| ||| ||||||| |||||||||||||||||||||| |||||    
T  24146825 aataattttagaaaatcacataattcaatataattatatgtgtcg 24146869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 36813225 - 36813197
Alignment:
Q  204 tttaagaaaataacataattcaatataat 232  Q
    |||||||||||||||||||||||||||||    
T  36813225 tttaagaaaataacataattcaatataat 36813197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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