View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_low_10 (Length: 344)
Name: NF11419_low_10
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_10 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 376923 - 376597
Alignment:
| Q |
18 |
ggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgt |
117 |
Q |
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| T |
376923 |
ggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgt |
376824 |
T |
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| Q |
118 |
tgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaa |
217 |
Q |
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| T |
376823 |
tgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttaaaaatagagtgaa |
376724 |
T |
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| Q |
218 |
gaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataatt |
317 |
Q |
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| T |
376723 |
gaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataatt |
376624 |
T |
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| Q |
318 |
gtcaaaacgcttgctcattatgtgatg |
344 |
Q |
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| T |
376623 |
gtcaaaacgcttgctcattatgtgatg |
376597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 347574 - 347899
Alignment:
| Q |
19 |
gaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgtt |
118 |
Q |
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| T |
347574 |
gaaagacaattgggatcacatccaagaactacggaacaaatgttgttgaatgtgaaacgattgaagacatcttgtaaatccaccactgacccttgttgtt |
347673 |
T |
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| Q |
119 |
gtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaag |
218 |
Q |
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| T |
347674 |
gtacatggtcaaacaaaggaatcaaacttctctccaacttgttttgaatgattttcttttgaaacaattcaaaatctctttgtttgaaaatagagtgaaa |
347773 |
T |
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| Q |
219 |
aagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattg |
318 |
Q |
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| T |
347774 |
aagagacctattgtatttccatttctccgaatcagcgttgaatattccatctccaaaggcttcaaaaatctcatgaaattcttgaccctttacataatta |
347873 |
T |
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| Q |
319 |
tcaaaacgcttgctcattatgtgatg |
344 |
Q |
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| T |
347874 |
tcaaaacacttgctcatcatgtgatg |
347899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 356232 - 356538
Alignment:
| Q |
18 |
ggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
356232 |
ggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgt |
356331 |
T |
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| Q |
118 |
tgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaa |
217 |
Q |
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| T |
356332 |
tgtacatggtccaacaaaggaatcaaacttttctccaacttgttttgaatgattttcttttgaaacatttcaaaatctcttattttcaaaatagagtgaa |
356431 |
T |
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| Q |
218 |
gaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataatt |
317 |
Q |
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| T |
356432 |
aaagagacctattgtatttccatgtctccgaatcagtgttgaatattccatctccaaaggcttcaaatatctcatgatattcatgacccttaacataatt |
356531 |
T |
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| Q |
318 |
gtcaaaa |
324 |
Q |
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||||||| |
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| T |
356532 |
gtcaaaa |
356538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 337142 - 336917
Alignment:
| Q |
18 |
ggaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagcc---ttgt |
114 |
Q |
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||||||||||||||| ||| |||||||| | ||||||||||| || |||||||| |||||||| || ||||||||||| ||||| || || |||| |
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| T |
337142 |
ggaaagacaattagggtcatgtccaagaattattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccaccgacccattttgt |
337043 |
T |
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| Q |
115 |
tgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagt |
214 |
Q |
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| T |
337042 |
tgttgaacatgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatatt |
336943 |
T |
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| Q |
215 |
gaagaagagacctattatatttccat |
240 |
Q |
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| T |
336942 |
ggagaagattcctattgtatttccat |
336917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 341179 - 340955
Alignment:
| Q |
19 |
gaaagacaattaggatcacatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgtt |
118 |
Q |
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||||||||||| |||||| |||||||| | |||||||||| ||||||||||| |||||||| |||||||||||||| ||||| || |||| ||||| |
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| T |
341179 |
gaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcgaatgtgaatcgattgaacacatcttgtaaatcgaccaccgaccctttttgtt |
341080 |
T |
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| Q |
119 |
gt---acatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtg |
215 |
Q |
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| T |
341079 |
gtagaacatgattcaatattggaatcaatgatttctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagatattg |
340980 |
T |
|
| Q |
216 |
aagaagagacctattatatttccat |
240 |
Q |
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|||||| |||||| ||||||||| |
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| T |
340979 |
gagaagattcctattgtatttccat |
340955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 332191 - 332126
Alignment:
| Q |
55 |
caaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgttgt |
120 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||||||| |||| || |||| ||||||| |
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| T |
332191 |
caaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgt |
332126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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