View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_low_12 (Length: 338)
Name: NF11419_low_12
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 4259534 - 4259829
Alignment:
| Q |
1 |
aagttgtgacgggtttgaatttcaattttgtcgagataattttcgatatctgaatatctattgccttccaatcatctaattacttcaatgttgtgtctgt |
100 |
Q |
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| T |
4259534 |
aagttgtgtcgggtttgaatttcaattttgtcgagataattttcgatatctgaatatctattgccttccaatcatctaattacttcaatgttgtgtctgt |
4259633 |
T |
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| Q |
101 |
catgtgcaattgccataataagaattaaaaacacaattatgttttttctgtcttataccagaagtgtcagctaactgaaaaggaccaccgatacttg-nn |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4259634 |
catgcgcaattgccataataagaattaaaaacacaataatgttttttctgtcttttaccaaaagtgtcagctaactgaaaaggaccaccgatacttgttt |
4259733 |
T |
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| Q |
200 |
nnnnnnnagggaagggcctgatatttgttgcttcctcagaaaaacaagaatcaacaacaccttcattcatcttagttcttccatttttcttgtact |
295 |
Q |
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|||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259734 |
tttttttagggaagggcctgaagtttgttacctcctcagaaaaacaagaatcaacaacaccttcattcatcttagttcttccatttttcttgtact |
4259829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 4290415 - 4290343
Alignment:
| Q |
223 |
tttgttgcttcctcagaaaaacaagaatcaacaacaccttcattcatctta-gttcttccatttttcttgtac |
294 |
Q |
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||||||| ||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
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| T |
4290415 |
tttgttgtgtcctcagaaaagcaagaatcaactacaccttcattcatcttacgatcttccatttttcttgtac |
4290343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 4293783 - 4293710
Alignment:
| Q |
223 |
tttgttgcttcctcagaaaaacaagaatcaacaacaccttcattcatctta-gttcttccatttttcttgtact |
295 |
Q |
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||||||| ||||||| ||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |
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| T |
4293783 |
tttgttgtatcctcaggaaagcaagaatcaactacaccttcattcatcttacgatcttccatttttcttgtact |
4293710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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