View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11419_low_16 (Length: 240)

Name: NF11419_low_16
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11419_low_16
NF11419_low_16
[»] chr7 (5 HSPs)
chr7 (56-218)||(47158688-47158850)
chr7 (90-189)||(28317390-28317489)
chr7 (98-186)||(42882255-42882344)
chr7 (57-104)||(22660607-22660654)
chr7 (132-218)||(30720642-30720729)
[»] chr4 (9 HSPs)
chr4 (69-218)||(40721641-40721790)
chr4 (69-218)||(34198544-34198693)
chr4 (69-222)||(8995385-8995537)
chr4 (69-222)||(3529548-3529700)
chr4 (69-221)||(34462835-34462987)
chr4 (60-104)||(52018278-52018322)
chr4 (60-104)||(38174174-38174218)
chr4 (132-189)||(16021396-16021453)
chr4 (145-189)||(52773441-52773485)
[»] chr3 (6 HSPs)
chr3 (51-210)||(10381027-10381186)
chr3 (90-189)||(42564610-42564709)
chr3 (69-220)||(6044620-6044770)
chr3 (59-104)||(29702294-29702339)
chr3 (59-104)||(41183896-41183941)
chr3 (132-218)||(51998702-51998789)
[»] chr5 (5 HSPs)
chr5 (69-220)||(19241941-19242091)
chr5 (56-104)||(7651612-7651660)
chr5 (57-104)||(31007789-31007836)
chr5 (59-104)||(42804075-42804120)
chr5 (132-201)||(13592381-13592451)
[»] chr2 (5 HSPs)
chr2 (69-222)||(43022313-43022465)
chr2 (56-213)||(22349177-22349333)
chr2 (132-218)||(36527338-36527425)
chr2 (132-201)||(44280648-44280718)
chr2 (145-189)||(14383527-14383571)
[»] chr1 (7 HSPs)
chr1 (69-220)||(48384466-48384616)
chr1 (89-218)||(31160059-31160188)
chr1 (132-218)||(29919886-29919973)
chr1 (145-218)||(37690770-37690844)
chr1 (145-218)||(45623003-45623077)
chr1 (145-201)||(51493945-51494002)
chr1 (145-189)||(14097243-14097287)
[»] chr6 (1 HSPs)
chr6 (59-189)||(10886895-10887021)
[»] chr8 (3 HSPs)
chr8 (57-104)||(15057329-15057376)
chr8 (145-218)||(42860444-42860518)
chr8 (145-218)||(45100497-45100571)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 47158688 - 47158850
Alignment:
Q  56 ataagactatgtgcaatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggaggg 155  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  47158688 ataagactagttgcaatggggtgttgaatttgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaatgaaaaatctgagttggaggaggg 47158787  T
Q  156 aagtgttgaatgaattcaactagttgaatgcctgtccacggagacagctgtcgcgcgcggatt 218  Q
    ||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  47158788 aagtgatgaatgagttcaactagttgaatgcctgcccacggagccagctgtcgcgcgcggatt 47158850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 28317390 - 28317489
Alignment:
Q  90 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||    
T  28317390 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagtgttgaattgattcaactagttgaaagcctg 28317489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 42882344 - 42882255
Alignment:
Q  98 tgttgaagccatgcaatgaggggtgttgaaagaagga-aaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgc 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| || ||||||| |||||||||    
T  42882344 tgttgaagccatgcaatgaggggtgttgaaagaaggaaaaaatctgagttggaggagggaagtgatgaaagagttcaacttgttgaatgc 42882255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 22660654 - 22660607
Alignment:
Q  57 taagactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    |||||| | |||||||||| ||||||||||| ||||||||||||||||    
T  22660654 taagaccaagtgcaatgggatgttgaatttgcaattcaacatgttgaa 22660607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 30720729 - 30720642
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  30720729 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 30720642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 40721790 - 40721641
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40721790 caatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagtgttgaatga 40721691  T
Q  169 attcaactagttgaatgcctgtccac-ggagacagctgtcgcgcgcggatt 218  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  40721690 attcaactagttgaatgcctg-ccacaggggacagctgtcgcgcgcggatt 40721641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 34198544 - 34198693
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34198544 caatggggtgttgaatatgggattcaacatgttgaagccttgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagtgttgaatga 34198643  T
Q  169 attcaactagttgaatgcctgtccacggagacagctgtcgcgcgcggatt 218  Q
    ||||||||||||||||||||| |   || |||||||||||||||||||||    
T  34198644 attcaactagttgaatgcctgccatgggggacagctgtcgcgcgcggatt 34198693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 8995537 - 8995385
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  8995537 caatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtgatgaaaga 8995438  T
Q  169 attcaactagttgaatgcctgtccacgga-gacagctgtcgcgcgcggatttgcc 222  Q
     |||||| |||||||| |||| ||||||| |||||||||||||||||||||||||    
T  8995437 gttcaacaagttgaat-cctg-ccacggaggacagctgtcgcgcgcggatttgcc 8995385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 3529548 - 3529700
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  3529548 caatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtgatgaaaga 3529647  T
Q  169 attcaactagttgaatgcctgtccac-ggagacagctgtcgcgcgcggatttgcc 222  Q
     ||||||||||||||| |||| |||| || ||||||||| |||||||||||||||    
T  3529648 gttcaactagttgaat-cctg-ccacgggggacagctgttgcgcgcggatttgcc 3529700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 34462835 - 34462987
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||| |  |||||||||||| |||||||||||||||||||||||     
T  34462835 caatgggctgttgaatgagcaattcaacatgttgaagccatgcaatgaggggtgttgaatgt-ggaaaaatctgagttggaggagggaagtgttgaatgg 34462933  T
Q  169 attcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatttgc 221  Q
    ||||||||||||||| |  | | ||||||||||||||| ||||||| |||||||    
T  34462934 attcaactagttgaaagggtggcccacggagacagctggcgcgcgcagatttgc 34462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 52018322 - 52018278
Alignment:
Q  60 gactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  52018322 gactatgtgcaatgggatgttgaatttgcaattcaacatgttgaa 52018278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 38174218 - 38174174
Alignment:
Q  60 gactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||    
T  38174218 gactatgtgcaatggaatgttgaatttgcaattcaacatgttgaa 38174174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16021453 - 16021396
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||||    
T  16021453 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 16021396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 52773485 - 52773441
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||    
T  52773485 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 52773441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 10381027 - 10381186
Alignment:
Q  51 tcaacataagactatgtgcaatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggag 150  Q
    |||| |||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10381027 tcaatataagactagctacaatggggtgttgaatttgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggag 10381126  T
Q  151 gagggaagtgttgaatgaattcaactagttgaatgcctgtccac-ggagacagctgtcgcg 210  Q
    |||||||||| |||| || |||||||||||||||||||| |||| || |||||||||||||    
T  10381127 gagggaagtgatgaaagagttcaactagttgaatgcctg-ccacgggggacagctgtcgcg 10381186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 42564709 - 42564610
Alignment:
Q  90 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  42564709 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagtgttgaatggattcaactagttgaaagcctg 42564610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 6044620 - 6044770
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  6044620 caatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtgatgaaaga 6044719  T
Q  169 attcaactagttgaatgcctgtccacgga-gacagctgtcgcgcgcggatttg 220  Q
     |||||| |||||||| |||| ||||||| ||||| || ||||||||||||||    
T  6044720 gttcaacaagttgaat-cctg-ccacggaggacaggtggcgcgcgcggatttg 6044770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 29702339 - 29702294
Alignment:
Q  59 agactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  29702339 agactatgtgcaatgggatgttgaatttgcaattcaacatgttgaa 29702294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 41183941 - 41183896
Alignment:
Q  59 agactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||||    
T  41183941 agactatgtgcaatgggatgttgaatttgcaattcaacgtgttgaa 41183896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 51998702 - 51998789
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  51998702 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 51998789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 19242091 - 19241941
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||    
T  19242091 caatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaagaaaaaatctgagttggaggagggaagtgatgaaaga 19241992  T
Q  169 attcaactagttgaatgcctgtccac-ggagacagctgtcgcgcgcggatttg 220  Q
     ||||||||||||||| |||| |||| || |||||||||||||||||||||||    
T  19241991 gttcaactagttgaat-cctg-ccacgggggacagctgtcgcgcgcggatttg 19241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 7651660 - 7651612
Alignment:
Q  56 ataagactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  7651660 ataagactatgtgcaatgggatgttgaatttgcaattcaacatgttgaa 7651612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 31007789 - 31007836
Alignment:
Q  57 taagactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  31007789 taagactatgtgcaatggaatgttgaatttgcaattcaacatgttgaa 31007836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 42804075 - 42804120
Alignment:
Q  59 agactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||    
T  42804075 agaccatgtgcaatgggatgttgaatttgcaattcaacatgttgaa 42804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 13592381 - 13592451
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagaca 201  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||    
T  13592381 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagaca 13592451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 43022465 - 43022313
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  43022465 caatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtgatgaaaga 43022366  T
Q  169 attcaactagttgaatgcctgtccac-ggagacagctgtcgcgcgcggatttgcc 222  Q
     ||||||||||||||| |||| |||| || |||||||||||||||||||||||||    
T  43022365 gttcaactagttgaat-cctg-ccacgggggacagctgtcgcgcgcggatttgcc 43022313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 22349177 - 22349333
Alignment:
Q  56 ataagactatgtgcaatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggaggg 155  Q
    |||||||||  | |||||||||||||||| ||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||    
T  22349177 ataagactagctacaatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggaggg 22349276  T
Q  156 aagtgttgaatgaattcaactagttgaatgcctgtccacggag-acagctgtcgcgcgc 213  Q
    ||||| |||| || ||||||| ||||||||| || |||||| | |||||||||||||||    
T  22349277 aagtgatgaaagagttcaacttgttgaatgc-tg-ccacgggggacagctgtcgcgcgc 22349333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 36527425 - 36527338
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  36527425 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 36527338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 44280718 - 44280648
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagaca 201  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||    
T  44280718 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagaca 44280648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 14383571 - 14383527
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||    
T  14383571 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 14383527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 48384466 - 48384616
Alignment:
Q  69 caatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatga 168  Q
    |||||||||||||||| ||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  48384466 caatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtgatgaaaga 48384565  T
Q  169 attcaactagttgaatgcctgtccacgga-gacagctgtcgcgcgcggatttg 220  Q
     |||||| |||||||| |||| ||||||| ||||| || ||||||||||||||    
T  48384566 gttcaacaagttgaat-cctg-ccacggaggacaggtggcgcgcgcggatttg 48384616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 31160188 - 31160059
Alignment:
Q  89 aattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct 188  Q
    ||||||||||||||||||||||||||||||| |||||||      |||||||||| ||||||||||||||||||||||| ||||||| ||||||| |  |    
T  31160188 aattcaacatgttgaagccatgcaatgaggg-tgttgaatctgcaaaaaatctgagttggaggagggaagtgttgaatggattcaacaagttgaaaggat 31160090  T
Q  189 -gtccacggagacagctgtcgcgcgcggatt 218  Q
     | ||||||||||||||| ||||||| ||||    
T  31160089 ggcccacggagacagctggcgcgcgcagatt 31160059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 29919973 - 29919886
Alignment:
Q  132 ggaaaaatctgaattggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  29919973 ggaaaaaagtgagttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 29919886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 37690770 - 37690844
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  37690770 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 37690844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 45623003 - 45623077
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  45623003 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 45623077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 51493945 - 51494002
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagaca 201  Q
    |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||    
T  51493945 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagaca 51494002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 14097287 - 14097243
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcctg 189  Q
    |||||||||||||||||||||  ||||||||  ||||||||||||    
T  14097287 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctg 14097243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 10887021 - 10886895
Alignment:
Q  59 agactatgtgcaatggggtgttgaatttggaattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgaattggaggagggaag 158  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| |  || |    |||||||||||    |||||||||||| ||||||||||||||    
T  10887021 agactatgtgcaatgggatgttgaatttgcaattcaacatgttgaaccattgtag---ggggtgttgaattt-ggaaaaatctgagttggaggagggaag 10886926  T
Q  159 tgttgaatgaattcaactagttgaatgcctg 189  Q
    ||||||||||||||||||||||||| |||||    
T  10886925 tgttgaatgaattcaactagttgaaagcctg 10886895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 15057376 - 15057329
Alignment:
Q  57 taagactatgtgcaatggggtgttgaatttggaattcaacatgttgaa 104  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  15057376 taagactatgtgcaatggaatgttgaatttgcaattcaacatgttgaa 15057329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 42860518 - 42860444
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  42860518 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 42860444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 45100497 - 45100571
Alignment:
Q  145 ttggaggagggaagtgttgaatgaattcaactagttgaatgcct-gtccacggagacagctgtcgcgcgcggatt 218  Q
    |||||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||  || ||||||| ||||    
T  45100497 ttggaggagggaagtgttgaaacaattcaacatgttgaatgcctggcccacggagacacttggcgcgcgctgatt 45100571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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