View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_low_2 (Length: 581)
Name: NF11419_low_2
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 5800839 - 5800270
Alignment:
| Q |
1 |
ggtggttactaacatgatttttgagtcaaatgaaacataaattataagctaaaaaatatgtcttacctaacaagaaaaatgaaagctactttgaatctga |
100 |
Q |
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| T |
5800839 |
ggtggttactaacatgatttttgagtcaaatgaaacataaattataagctaaaaaatatgtcttacctaacaagaaaaatgaaagctactttgaatctga |
5800740 |
T |
|
| Q |
101 |
tattgtaaaaaagcttcatatataaaatcataaattaaaaacnnnnnnn-gtttgtctcatt------gccttttacatatcaatccttaatttaatgtt |
193 |
Q |
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| T |
5800739 |
tattgtaaaaaagcttcatatataaaatcataaattaaaaacttttttttgtttgtctcattctcattgccttttacatatcaatccttaatttaatgtt |
5800640 |
T |
|
| Q |
194 |
taagaaaagaaagcgaacgtagaatagaatagaatgagttaaagggaaggaacgtaaatgagagttaaagcgaacgttgattgaaacaacacacacgatt |
293 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800639 |
taagaaaagaaagcgaacgtagaatagaat-----gagttaaagggaaggaacgtaaatgagagttaaagcgaacgttgattgaaacaacacacacgatt |
5800545 |
T |
|
| Q |
294 |
gatgatgatagcttgacttccctccctccatccttcgttgttgacgtaattgatactcaaagcctaactctgtgattttccttatcacttcttaaatcac |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800544 |
gatgatgatagcttgacttccctccctccatccttcgttgttgacgtaattgatactcaaagcctaactctgtgattttccttatcacttcttaaatcac |
5800445 |
T |
|
| Q |
394 |
caccattgcgtgcgcagttcacaaattcaatcatggcgatgactcaattcatctcaatcttctttctaattctacaccttccactcttcactctctctat |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800444 |
caccattgcgtgcgcagttcacaaattcaatcatggcgatgactcaattcatctcaatcttctttctaattctacaccttccactcttcactctctctat |
5800345 |
T |
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| Q |
494 |
caatcccaacaacctcttattcttccctaatactcgtaacgcttctcgtcctgctatgattctccctcttcatct |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800344 |
caatcccaacaacctcttattcttccctaatactcgtaacgcttctcgtcctgctatgattctccctcttcatct |
5800270 |
T |
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