View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_low_4 (Length: 491)
Name: NF11419_low_4
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 7452325 - 7452685
Alignment:
| Q |
16 |
gacatcatactaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccacccaccccaaacctatttcactagtttctttaatt |
115 |
Q |
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| T |
7452325 |
gacatcatactaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccacccaccccaaacctatttcactagtttctttaatt |
7452424 |
T |
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| Q |
116 |
gttgacaagagcattgcatttgcataaccttnnnnnnnnttgaatacttcagttaatgaaatagagtccaacacaaatttaaattgatgtcaattactta |
215 |
Q |
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| T |
7452425 |
gttgacaagagcattgcatttgcataaccttaaaaaaaattgaatacttcagttaatgaaatagagtccaacacaaatttaaattgatgtcaattactta |
7452524 |
T |
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| Q |
216 |
gtaacaacaattaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaagtaaaatgaannnnnnnnnnnnnatgtcaatt |
315 |
Q |
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| T |
7452525 |
gtaacaacaattaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaagtaaaatgaa--acacacacacaatgtcaatt |
7452622 |
T |
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| Q |
316 |
caacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
378 |
Q |
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| T |
7452623 |
caacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
7452685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 7452737 - 7452781
Alignment:
| Q |
430 |
gactagttacatgatataatttagggtcgtcgacaatgagctttg |
474 |
Q |
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| T |
7452737 |
gactagttacatgatataatttagggtcgtcgacaatgagctttg |
7452781 |
T |
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