View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11419_low_5 (Length: 457)
Name: NF11419_low_5
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 38280883 - 38281205
Alignment:
| Q |
20 |
agtatatacacaaaagacaaaactactcatattttattctcaaaactactcctatttaatttctcataataaataagtaccatttcttttaaatattgat |
119 |
Q |
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| T |
38280883 |
agtatatacacaaaagacaaaactactcatattttattctcaaaactactcctatttaatttctcataataaataagtaccatttcttttaaatattgat |
38280982 |
T |
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| Q |
120 |
gtagttttagtataaatttattttgcagatacttttt----taaactcatactaattttcacaccaaccaagtcatcacaaaattgcaaaatgatattta |
215 |
Q |
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| T |
38280983 |
gtagttttagtatatgtattgttagtgtaaatttctcataataaataagtactaattttcacaccaaccaagtcatcacaaaattgcaaaatgatattta |
38281082 |
T |
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| Q |
216 |
attacaagacattgccggtggtttggatgtataaaaattagtataa---attattaaacacacggatcataaacaaggtgttatctcatttatctatagc |
312 |
Q |
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| T |
38281083 |
attacaagacattgccggtggtttggatgtataaaaattagtataaattattattaaacacacggatcataaacaaggtgttatctcatttatctatagc |
38281182 |
T |
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| Q |
313 |
cattgaacaagagtactatctgc |
335 |
Q |
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| T |
38281183 |
cattgaacaagagtactatctgc |
38281205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 38281242 - 38281310
Alignment:
| Q |
382 |
gaccaagcaagtcctatcaattgatatataaagaccatcctttatgatcttcctcatcaccctatgctt |
450 |
Q |
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| T |
38281242 |
gaccaagcaagtcctatcaattgatatataaagaccatcctttatgatcttcctcatcaccctttgctt |
38281310 |
T |
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