View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11419_low_6 (Length: 451)
Name: NF11419_low_6
Description: NF11419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11419_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 43148139 - 43148571
Alignment:
| Q |
1 |
accagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctgtcgtgattcaatttattctcaatcacaacggcttgaaaaatgttagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43148139 |
accagaatttagtcatgcttaatgagtgagtatgaaggaagtgaggttcctgtcgtgattcaatttattctcaatcacaacggcttgaaaaatgttagga |
43148238 |
T |
|
| Q |
101 |
acggaattggaagtagaaatgataaggcggtagatggcgtcttcagcaagggcaagacgagattcacctttgatgactttctcgaacttcaactttgccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43148239 |
acggaattggaagtagaaatgataaggcggtagatggcgtcttcagcaagggcaagacgagattcacctttgatgactttctcgaactttaactttgccc |
43148338 |
T |
|
| Q |
201 |
caatttatttgttgaactcgataacagcaaaattagcgatatcaatcacatgtgggttgttgatatctttgattcgactccaaccatccgacaaaggttg |
300 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43148339 |
cagtttgtttgttgaactcgataacagcaaaattagcgatatcaatcacatgtgggttgttgatatctttgattcgactccaaccatccgacaaaggttg |
43148438 |
T |
|
| Q |
301 |
cttccttgcatctgcataagacatnnnnnnnnnnnnnnnnnnnnnnnnttggagtttcatattgtattgtaaatgttatctttttaaagtttataattat |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43148439 |
cttccttgcatctgcataagacatcaaaacaacaaaaagaacaaacaattggagtttcatattgtattgtaaatgttatctttttaaagtttataattat |
43148538 |
T |
|
| Q |
401 |
agttgctgtggattagcctttagccggttaggt |
433 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
43148539 |
agttgttgtggattagcctttagccggttaggt |
43148571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 44664678 - 44664805
Alignment:
| Q |
159 |
gagattcacctttgatgactttctcgaacttcaactttgccccaatttatttgttgaactcgataacagcaaaattagcgatatcaatcacatgtgggtt |
258 |
Q |
| |
|
|||||||||| ||||||| ||| || | ||||| ||||||||| | | |||||| ||||| ||||||||||||| |||||| ||||||| ||||| | |
|
|
| T |
44664678 |
gagattcacccttgatgagtttatcaagtttcaagtttgccccagtatgcttgttgtactcggtaacagcaaaattggcgataacaatcacgtgtggatc |
44664777 |
T |
|
| Q |
259 |
gttgatatctttgattcgactccaacca |
286 |
Q |
| |
|
|||||| || |||||| | ||||||||| |
|
|
| T |
44664778 |
gttgatgtccttgattgggctccaacca |
44664805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University